Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0132400-01 | Rice | nucleus | 41.7 | 73.86 |
| Bra040681.1-P | Field mustard | cytosol | 80.44 | 60.22 |
| CDY21659 | Canola | nucleus | 99.63 | 57.08 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 83.03 | 47.97 |
| PGSC0003DMT400065692 | Potato | cytoskeleton, cytosol, nucleus | 52.4 | 46.56 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 75.65 | 43.25 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 62.36 | 42.57 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 71.22 | 41.24 |
| KRH58776 | Soybean | nucleus | 71.96 | 41.23 |
| Solyc07g039200.2.1 | Tomato | nucleus | 67.9 | 39.83 |
| PGSC0003DMT400034220 | Potato | nucleus | 68.27 | 39.45 |
| KRH42676 | Soybean | nucleus | 70.85 | 38.87 |
| TraesCS4A01G187400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 66.05 | 37.14 |
| TraesCS4B01G131200.1 | Wheat | nucleus | 65.68 | 36.93 |
| HORVU4Hr1G026330.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 65.31 | 36.72 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 51.29 | 36.68 |
| OQU82815 | Sorghum | mitochondrion | 61.99 | 36.6 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 64.94 | 36.51 |
| Os11t0134500-01 | Rice | nucleus | 62.36 | 36.34 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 64.21 | 36.33 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 63.84 | 36.19 |
| Zm00001d010850_P003 | Maize | plasma membrane | 62.73 | 35.34 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 57.56 | 33.69 |
| TraesCS5B01G137200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 59.41 | 33.33 |
| TraesCS5A01G139800.1 | Wheat | mitochondrion, plastid | 58.67 | 32.92 |
| Bra032295.1-P | Field mustard | cytosol | 16.61 | 14.2 |
| Bra010844.1-P | Field mustard | cytosol | 16.61 | 14.2 |
| Bra002667.1-P | Field mustard | nucleus | 19.93 | 12.68 |
| Bra037289.1-P | Field mustard | cytosol | 19.19 | 12.59 |
| Bra036717.1-P | Field mustard | nucleus | 21.77 | 12.29 |
| Bra011133.1-P | Field mustard | nucleus | 21.4 | 12.18 |
| Bra020379.1-P | Field mustard | cytosol | 18.45 | 12.02 |
| Bra001997.1-P | Field mustard | nucleus | 18.45 | 11.96 |
| Bra031085.1-P | Field mustard | nucleus | 22.14 | 11.9 |
| Bra040678.1-P | Field mustard | nucleus | 21.03 | 11.47 |
| Os12t0132300-02 | Rice | cytosol | 1.48 | 2.19 |
| Os11t0134400-00 | Rice | cytosol | 1.48 | 2.19 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EnsemblPlantsGene:Bra031087 | EnsemblPlants:Bra031087.1 | EnsemblPlants:Bra031087.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M4EQL6 |
| PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF6 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00025429DB | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
AT2G19540 (E=3e-091) | transducin family protein / WD-40 repeat family protein
Coordinates
chrA09:-:32528424..32530591
Molecular Weight (calculated)
29834.5 Da
IEP (calculated)
4.511
GRAVY (calculated)
-0.563
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRSINPKKA KRKNKAEKAP SNSIGVFKIS NVSGKRRDVV PKTLVNGDDA MEDEEDEDED SDSDEESEDG GASTVPIIQW SPAEANVFAS CSVDKTVAVW
101: DVRAGKSPAL SFKAHDADVN VISWNRLASC MLASGSDDGA FSIHDLRVIK DGDAKVAHFE YHKHPITSIE WSAHESSTLA VSSGDNQLTI WDLSLEKDEE
201: EEAEFKAQTK EQVNTPQDLP PQLLFVHQGQ KDLKELHWHN QIPGMIISTA ADGFNILMPY NIQNTLPDLA P
101: DVRAGKSPAL SFKAHDADVN VISWNRLASC MLASGSDDGA FSIHDLRVIK DGDAKVAHFE YHKHPITSIE WSAHESSTLA VSSGDNQLTI WDLSLEKDEE
201: EEAEFKAQTK EQVNTPQDLP PQLLFVHQGQ KDLKELHWHN QIPGMIISTA ADGFNILMPY NIQNTLPDLA P
001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
Arabidopsis Description
Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.