Factsheet for Bra036717.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48711	Canola	nucleus	99.79	95.23
CDY03358	Canola	nucleus	98.75	94.05
Bra040678.1-P	Field mustard	nucleus	94.38	91.15
Bra031085.1-P	Field mustard	nucleus	94.58	90.08
AT2G19520.1	Thale cress	nucleus	92.08	87.18
KRH12388	Soybean	nucleus	78.75	74.41
GSMUA_Achr4P08720_001	Banana	cytosol	62.92	74.2
KRH37388	Soybean	nucleus	78.96	73.88
EES01357	Sorghum	nucleus	69.17	73.29
Os01t0710000-01	Rice	nucleus	67.92	71.96
TraesCS3A01G250900.2	Wheat	cytosol	69.38	70.7
TraesCS3B01G280400.1	Wheat	nucleus	69.38	70.7
Bra011133.1-P	Field mustard	nucleus	70.0	70.59
TraesCS3D01G251300.2	Wheat	nucleus	69.17	70.49
Zm00001d052871_P001	Maize	cytosol	4.38	70.0
VIT_11s0016g02170.t01	Wine grape	nucleus	72.92	68.9
HORVU3Hr1G066930.1	Barley	plastid	70.83	66.8
Solyc07g039330.2.1	Tomato	nucleus	50.0	63.66
Zm00001d011705_P002	Maize	cytosol	67.5	62.31
Zm00001d043682_P002	Maize	cytosol, plastid	67.92	61.63
Zm00001d043683_P001	Maize	cytosol	25.62	59.71
GSMUA_Achr7P24160_001	Banana	nucleus	29.38	58.75
GSMUA_Achr3P32330_001	Banana	cytosol	21.25	56.67
GSMUA_Achr7P09120_001	Banana	nucleus	52.08	54.95
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	25.83	53.91
Zm00001d050047_P001	Maize	nucleus	22.5	39.13
Bra037289.1-P	Field mustard	cytosol	26.46	30.75
Bra002667.1-P	Field mustard	nucleus	26.88	30.28
Bra001997.1-P	Field mustard	nucleus	25.83	29.67
Bra020379.1-P	Field mustard	cytosol	25.21	29.09
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.29	21.77
Bra010844.1-P	Field mustard	cytosol	14.17	21.45
Bra032295.1-P	Field mustard	cytosol	13.96	21.14
Bra040681.1-P	Field mustard	cytosol	14.17	18.78

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra036717	EnsemblPlants:Bra036717.1	EnsemblPlants:Bra036717.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4F6K7	PFAM:PF00400
PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002541FD7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

AT2G19520 (E=1e-182) FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE; metal ion binding

Coordinates

chrA09:+:5456722..5459706

Molecular Weight (calculated)

52870.7 Da

IEP (calculated)

5.735

GRAVY (calculated)

-0.578

Length

480 amino acids

Sequence
(BLAST)

001: MESDEAATAS PQASGGTVTP APKKRGRKPK NKDESQEQIS GGKMKESGKK TKQQEEQSVD EKYSQWKGLV PILYDWLANH NLVWPSLSCR WGPQLDQATY
101: KNRQRLYLSE QTDGSVPNTL VIANCEVVKP RVAAAEHISQ FNEEARSPFV KKYKTIIHPG EVLIWDVETQ PTRHAVLGAA SSRPDLILTG HQDNAEFALA
201: MCPTEPFVLS GGKDKMVVLW SIQDHITTVG TDSKSSGSII KQTGEGGDKT ESPSVGPRGV YQGHDDTVED VAFSPTSAQE FCSVGDDSCL ILWDARTGTS
301: PVTKVEKAHD ADLHCVDWNP HDDNLILTGS ADNTVRLYDR RNLTSNGVGT PIYKFEGHKA AVLCVQWSPD KASVFGSSAE DGLLNIWDYD RVSKKSDRAA
401: KNPAGLFFQH AGHRDKVVDF HWNAADPWTI VSVSDDCETT GGGGTLQIWR MSDLIYRPEE EVLTELEKFK SHVMTCASKP

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.