Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70287 | Canola | nucleus | 55.56 | 54.64 |
| PGSC0003DMT400006393 | Potato | nucleus | 65.0 | 33.81 |
| VIT_09s0002g02150.t01 | Wine grape | nucleus | 67.78 | 26.93 |
| CDX82696 | Canola | nucleus | 65.56 | 26.82 |
| EES01357 | Sorghum | nucleus | 67.22 | 26.71 |
| CDY29763 | Canola | endoplasmic reticulum | 48.89 | 26.11 |
| Solyc03g121580.2.1 | Tomato | nucleus | 66.11 | 25.87 |
| TraesCS3A01G250900.2 | Wheat | cytosol | 67.22 | 25.69 |
| TraesCS3B01G280400.1 | Wheat | nucleus | 67.22 | 25.69 |
| TraesCS3D01G251300.2 | Wheat | nucleus | 67.22 | 25.69 |
| Os01t0710000-01 | Rice | nucleus | 64.44 | 25.61 |
| KRH23320 | Soybean | endoplasmic reticulum | 64.44 | 25.27 |
| CDX81933 | Canola | nucleus | 65.56 | 24.38 |
| CDY48711 | Canola | nucleus | 67.78 | 24.25 |
| CDY03358 | Canola | nucleus | 67.78 | 24.21 |
| Bra040678.1-P | Field mustard | nucleus | 66.11 | 23.94 |
| HORVU3Hr1G066930.1 | Barley | plastid | 67.22 | 23.77 |
| AT2G19520.1 | Thale cress | nucleus | 66.67 | 23.67 |
| KRH12388 | Soybean | nucleus | 66.11 | 23.43 |
| Bra031085.1-P | Field mustard | nucleus | 65.0 | 23.21 |
| KRH37388 | Soybean | nucleus | 66.11 | 23.2 |
| CDY21661 | Canola | nucleus | 65.0 | 23.12 |
| Bra036717.1-P | Field mustard | nucleus | 56.67 | 21.25 |
| VIT_11s0016g02170.t01 | Wine grape | nucleus | 58.33 | 20.67 |
| CDY43523 | Canola | nucleus | 54.44 | 20.63 |
| Bra011133.1-P | Field mustard | nucleus | 53.89 | 20.38 |
| CDY06779 | Canola | nucleus | 54.44 | 20.21 |
| KRH10009 | Soybean | cytosol, mitochondrion, nucleus | 43.33 | 19.75 |
| AT4G29730.1 | Thale cress | nucleus | 53.33 | 19.71 |
| GSMUA_Achr4P08720_001 | Banana | cytosol | 44.44 | 19.66 |
| GSMUA_Achr7P09120_001 | Banana | nucleus | 45.56 | 18.02 |
| Solyc07g039330.2.1 | Tomato | nucleus | 23.89 | 11.41 |
| GSMUA_Achr8P33950_001 | Banana | nucleus | 25.56 | 11.39 |
| GSMUA_Achr1P26410_001 | Banana | nucleus | 25.0 | 11.06 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 25.0 | 10.64 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 21.67 | 9.29 |
| GSMUA_Achr7P24160_001 | Banana | nucleus | 10.56 | 7.92 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 18.33 | 7.05 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 8.33 | 4.72 |
| GSMUA_Achr10P... | Banana | mitochondrion | 7.22 | 4.06 |
| CDY35867 | Canola | cytosol | 2.78 | 1.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P32330_001 | EnsemblPlants:GSMUA_Achr3T32330_001 | EnsemblPlantsGene:GSMUA_Achr3G32330_001 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF184 | SEG:seg |
| UniParc:UPI0002948B3C | UniProt:M0SJP7 | MapMan:35.1 | : | : | : |
Description
WD-40 repeat-containing protein MSI4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G32330_001]
Coordinates
chr3:+:30238548..30247224
Molecular Weight (calculated)
20879.0 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.520
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MSERERERER GGKVTVDVRY AQWKSLVPLL YDWLANHNLS SFLPHLCRWG PQLDQATYKN RQRLYLSEQA IGSVDSTATV SQTICEIVKP RVAAAEHISQ
101: FNEETHSPFV KEYKTIIHPG EVNRIRELPQ YSKIVATHAD SPYVLQPNHH PMLGATESRP DLGRTMLQMR RRYSCVIFFI
101: FNEETHSPFV KEYKTIIHPG EVNRIRELPQ YSKIVATHAD SPYVLQPNHH PMLGATESRP DLGRTMLQMR RRYSCVIFFI
001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
Arabidopsis Description
MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.