Factsheet for PGSC0003DMT400006393

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121580.2.1	Tomato	nucleus	98.55	74.13
Zm00001d043683_P001	Maize	cytosol	41.33	69.42
GSMUA_Achr3P32330_001	Banana	cytosol	33.81	65.0
VIT_09s0002g02150.t01	Wine grape	nucleus	82.95	63.36
EES01357	Sorghum	nucleus	78.32	59.82
Os01t0710000-01	Rice	nucleus	77.46	59.16
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	38.73	58.26
KRH23320	Soybean	endoplasmic reticulum	77.17	58.17
TraesCS3A01G250900.2	Wheat	cytosol	78.61	57.75
TraesCS3B01G280400.1	Wheat	nucleus	78.32	57.54
TraesCS3D01G251300.2	Wheat	nucleus	78.03	57.32
GSMUA_Achr4P08720_001	Banana	cytosol	67.05	57.0
HORVU3Hr1G066930.1	Barley	plastid	78.03	53.05
Zm00001d043682_P002	Maize	cytosol, plastid	78.32	51.23
Zm00001d011705_P002	Maize	cytosol	75.14	50.0
GSMUA_Achr7P24160_001	Banana	nucleus	31.5	45.42
KRH10009	Soybean	cytosol, mitochondrion, nucleus	50.29	44.05
GSMUA_Achr7P09120_001	Banana	nucleus	56.65	43.08
Zm00001d050047_P001	Maize	nucleus	31.5	39.49
PGSC0003DMT400061016	Potato	cytosol	30.06	24.53
PGSC0003DMT400015787	Potato	cytosol	28.03	24.07
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	16.18	18.36
PGSC0003DMT400023242	Potato	cytosol	16.18	17.72
PGSC0003DMT400022498	Potato	cytosol	15.9	17.41
PGSC0003DMT400034220	Potato	nucleus	22.54	16.63
Zm00001d052871_P001	Maize	cytosol	0.0	0.0

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0ZR98	PFAM:PF00400	PFAM:PF12265	EnsemblPlantsGene:PGSC0003DMG400002498	PGSC:PGSC0003DMG400002498
EnsemblPlants:PGSC0003DMT400006393	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000295FC7A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002498]

Coordinates

chr3:-:60857172..60867163

Molecular Weight (calculated)

38006.4 Da

IEP (calculated)

6.004

GRAVY (calculated)

-0.428

Length

346 amino acids

Sequence
(BLAST)

001: MKDKTEKPGQ QPPTVDERYT QWKSLVPVLY DWLANHNLLW PSLSCRWGPQ FEQATYKNRQ RLYLSEQTDG SVPNTLVIAN CEVVKPRVAA AQHISQFNEE
101: ARSPFVKKFK TIIHPGEVNR IRELPQDSKI VATHTDSPDV LIWDVESQPN RHATLGVNNS RPDLILTGHQ DNAEFALAMC PSEPFVLSGG KDKSVVLWSI
201: HDHVSTLAAA DQGETKSPGS GAGNSKPSAE GPTVQARGIF QGHDDTVEDV QFCPSSAQEF CSVGDDSCLI LWDARAGSSP AVKVEKAHNA DLHCVDWNPH
301: DVNYILTGSA DNTVRMFDRR NLTSGGVGSP IHIFEGHAAA VLCVQV

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.