Factsheet for HORVU3Hr1G066930.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G280400.1	Wheat	nucleus	88.41	95.54
TraesCS3D01G251300.2	Wheat	nucleus	88.21	95.33
TraesCS3A01G250900.2	Wheat	cytosol	88.02	95.12
EES01357	Sorghum	nucleus	82.32	92.49
Os01t0710000-01	Rice	nucleus	81.53	91.61
VIT_09s0002g02150.t01	Wine grape	nucleus	70.14	78.81
Zm00001d043683_P001	Maize	cytosol	31.83	78.64
GSMUA_Achr4P08720_001	Banana	cytosol	62.87	78.62
Zm00001d011705_P002	Maize	cytosol	80.16	78.46
Zm00001d043682_P002	Maize	cytosol, plastid	81.34	78.26
PGSC0003DMT400006393	Potato	nucleus	53.05	78.03
Solyc03g121580.2.1	Tomato	nucleus	69.94	77.39
CDY29763	Canola	endoplasmic reticulum	50.49	76.26
CDX81933	Canola	nucleus	70.14	73.76
KRH23320	Soybean	endoplasmic reticulum	66.21	73.42
Bra040678.1-P	Field mustard	nucleus	71.12	72.84
KRH12388	Soybean	nucleus	71.91	72.05
CDY48711	Canola	nucleus	70.92	71.77
AT2G19520.1	Thale cress	nucleus	71.32	71.6
KRH37388	Soybean	nucleus	72.1	71.54
Bra031085.1-P	Field mustard	nucleus	70.73	71.43
CDY03358	Canola	nucleus	70.53	71.23
CDY21661	Canola	nucleus	70.73	71.15
Bra036717.1-P	Field mustard	nucleus	66.8	70.83
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	31.83	70.43
VIT_11s0016g02170.t01	Wine grape	nucleus	68.76	68.9
CDY70287	Canola	nucleus	24.75	68.85
CDY43523	Canola	nucleus	63.26	67.79
Bra011133.1-P	Field mustard	nucleus	63.06	67.44
CDY06779	Canola	nucleus	64.24	67.42
GSMUA_Achr3P32330_001	Banana	cytosol	23.77	67.22
AT4G29730.1	Thale cress	nucleus	63.65	66.53
Solyc07g039330.2.1	Tomato	nucleus	48.72	65.78
CDX82696	Canola	nucleus	56.58	65.45
CDY35867	Canola	cytosol	35.95	64.44
KRH10009	Soybean	cytosol, mitochondrion, nucleus	47.94	61.77
GSMUA_Achr7P24160_001	Banana	nucleus	29.08	61.67
GSMUA_Achr7P09120_001	Banana	nucleus	52.65	58.9
Zm00001d050047_P001	Maize	nucleus	24.75	45.65
HORVU2Hr1G092350.1	Barley	cytosol	8.64	31.65
HORVU5Hr1G084160.2	Barley	cytosol	22.59	27.45
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	21.61	22.82
HORVU3Hr1G082800.3	Barley	cytosol, mitochondrion	9.04	14.29

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A287LG02	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:HORVU3Hr1G066930	EnsemblPlants:HORVU3Hr1G066930.1
InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF85	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B4747A2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:508405447..508413405

Molecular Weight (calculated)

56084.1 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.572

Length

509 amino acids

Sequence
(BLAST)

001: LPFSLQPQPR YSSAPWYFAP SGRQTGTDSQ RALPLHRARA RAEQSSAAAS SGAEMKERGG SRAAVDERYA QWKSLIPVLY DWFANHNLVW PSLSCRWGPQ
101: FEQATYKNRQ RLYLSEQTDG SVPNTLVIAN CEVVKPRVAA AEHISQFNEE ARSPFVKKYK TIIHPGEVNR IRELPQNSRI IATHTDSPDV LIWDVEAQPN
201: RHAVLGATDS RPDLILRGHQ ENAEFALAMC PAEPYVLSGG KDKSVVWWSI QDHISGLGDS SKSETPPGAS GSKHSKTATE KDSPKVDPRG VFHGHDSTVE
301: DVQFCPSSAQ EFCSVGDDAC LILWDARTGT SPAVKVEKAH GGDVHCVDWN PHDVNYILTG SADNSVRMWD RRNLGPGGAG SSIHKFEGHK AAVLCVQWSP
401: DKASVFGSSA EDGFLNVWDH EKVGKKKNPN SPGGLFFQHA GHRDKIVDFH WNSSDPWTIV SVSDDGESTG GGGTLQIWRM SDLIYRPEDE VLSELETFKS
501: HLASCTPRA

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.