Factsheet for Solyc03g121580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006393	Potato	nucleus	74.13	98.55
VIT_09s0002g02150.t01	Wine grape	nucleus	82.17	83.44
GSMUA_Achr4P08720_001	Banana	cytosol	69.57	78.62
Os01t0710000-01	Rice	nucleus	77.17	78.37
EES01357	Sorghum	nucleus	76.74	77.92
KRH23320	Soybean	endoplasmic reticulum	77.39	77.56
TraesCS3A01G250900.2	Wheat	cytosol	77.61	75.8
TraesCS3B01G280400.1	Wheat	nucleus	77.39	75.58
TraesCS3D01G251300.2	Wheat	nucleus	77.17	75.37
HORVU3Hr1G066930.1	Barley	plastid	77.39	69.94
Zm00001d043683_P001	Maize	cytosol	31.09	69.42
Solyc07g039330.2.1	Tomato	nucleus	56.74	69.23
GSMUA_Achr3P32330_001	Banana	cytosol	25.87	66.11
Zm00001d011705_P002	Maize	cytosol	74.35	65.77
KRH10009	Soybean	cytosol, mitochondrion, nucleus	55.43	64.56
Zm00001d043682_P002	Maize	cytosol, plastid	73.7	64.08
Zm00001d052871_P001	Maize	cytosol	4.13	63.33
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	30.0	60.0
GSMUA_Achr7P09120_001	Banana	nucleus	57.61	58.24
GSMUA_Achr7P24160_001	Banana	nucleus	30.0	57.5
Solyc07g039320.2.1	Tomato	nucleus	18.7	56.58
Zm00001d050047_P001	Maize	nucleus	23.7	39.49
Solyc01g111590.2.1	Tomato	cytosol	28.7	32.75
Solyc01g104510.2.1	Tomato	nucleus	30.0	32.55
Solyc05g014090.1.1	Tomato	mitochondrion	20.0	23.17
Solyc07g039200.2.1	Tomato	nucleus	22.17	22.08
Solyc03g062940.2.1	Tomato	cytosol	14.57	21.2
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	20.22	20.09
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	15.87	19.26
Solyc05g014070.1.1	Tomato	cytosol, mitochondrion, nucleus	3.04	11.86

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4BMV7	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF85	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc03g121580.2	EnsemblPlants:Solyc03g121580.2.1
UniParc:UPI0002767311	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr3:-:69656180..69667376

Molecular Weight (calculated)

50836.0 Da

IEP (calculated)

5.020

GRAVY (calculated)

-0.474

Length

460 amino acids

Sequence
(BLAST)

001: MKDKTEKAGE QPPTVDERYT QWKSLVPVLY DWLANHNLLW PSLSCRWGPQ FEQATYKNRQ RLYLSEQTDG SVPNTLVIAN CEVVKPRVAA AQHISQFNEE
101: ARSPFVKKFK TIIHPGEVNR IRELPQDSKI VATHTDSPDV LIWDVESQPN RHATLGVNNS RPDLILTGHQ DNAEFALAMC PSEPFVLSGG KDKSVVLWSI
201: HDHVSTLAAA DQGETKSPGS GAGNSKPSAE GPTVQARGIF QGHDDTVEDV QFCPSSAQEF CSVGDDSCLI LWDARAGSSP AVKVEKAHNA DLHCVDWNPH
301: DVNYILTGSA DNTVRMFDRR NLTSGGVGSP VHIFEGHTAA VLCVQWSPDK SSVFGSSAED GILNIWDHER IGNWEDGASR EDPTSPPGLF FRHAGHRDKV
401: VDFHWNVADP WTIVSVSDDG ESTGGGGTLQ IWRMIDLIYR PEDEVLDELD KFKSHLLTCS

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.