Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053451_P001 | Maize | cytosol, nucleus, plastid | 41.67 | 50.0 |
| PGSC0003DMT400006393 | Potato | nucleus | 39.49 | 31.5 |
| CDY29763 | Canola | endoplasmic reticulum | 35.87 | 29.38 |
| EES01357 | Sorghum | nucleus | 48.19 | 29.36 |
| Os01t0710000-01 | Rice | nucleus | 44.93 | 27.37 |
| TraesCS3D01G251300.2 | Wheat | nucleus | 46.01 | 26.96 |
| TraesCS3B01G280400.1 | Wheat | nucleus | 46.01 | 26.96 |
| TraesCS3A01G250900.2 | Wheat | cytosol | 46.01 | 26.96 |
| Zm00001d011705_P002 | Maize | cytosol | 48.91 | 25.96 |
| CDY35867 | Canola | cytosol | 26.09 | 25.35 |
| Zm00001d043682_P002 | Maize | cytosol, plastid | 48.19 | 25.14 |
| CDX82696 | Canola | nucleus | 39.49 | 24.77 |
| HORVU3Hr1G066930.1 | Barley | plastid | 45.65 | 24.75 |
| VIT_09s0002g02150.t01 | Wine grape | nucleus | 39.49 | 24.06 |
| Zm00001d043683_P001 | Maize | cytosol | 17.75 | 23.79 |
| Solyc03g121580.2.1 | Tomato | nucleus | 39.49 | 23.7 |
| Solyc07g039330.2.1 | Tomato | nucleus | 32.25 | 23.61 |
| CDX81933 | Canola | nucleus | 39.49 | 22.52 |
| Bra036717.1-P | Field mustard | nucleus | 39.13 | 22.5 |
| KRH23320 | Soybean | endoplasmic reticulum | 36.96 | 22.22 |
| Bra040678.1-P | Field mustard | nucleus | 39.86 | 22.13 |
| AT2G19520.1 | Thale cress | nucleus | 40.22 | 21.89 |
| CDY48711 | Canola | nucleus | 39.86 | 21.87 |
| VIT_11s0016g02170.t01 | Wine grape | nucleus | 40.22 | 21.85 |
| CDY03358 | Canola | nucleus | 39.86 | 21.83 |
| CDY06779 | Canola | nucleus | 38.04 | 21.65 |
| Bra031085.1-P | Field mustard | nucleus | 39.49 | 21.63 |
| AT4G29730.1 | Thale cress | nucleus | 38.04 | 21.56 |
| CDY21661 | Canola | nucleus | 39.49 | 21.54 |
| KRH12388 | Soybean | nucleus | 39.49 | 21.46 |
| KRH37388 | Soybean | nucleus | 39.49 | 21.25 |
| CDY43523 | Canola | nucleus | 35.51 | 20.63 |
| Bra011133.1-P | Field mustard | nucleus | 35.51 | 20.59 |
| CDY70287 | Canola | nucleus | 9.78 | 14.75 |
| Zm00001d022614_P001 | Maize | cytosol | 16.67 | 11.41 |
| KRH10009 | Soybean | cytosol, mitochondrion, nucleus | 16.3 | 11.39 |
| Zm00001d033247_P001 | Maize | nucleus | 17.03 | 10.9 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 17.03 | 10.9 |
| Zm00001d013702_P001 | Maize | nucleus | 16.67 | 10.67 |
| Zm00001d016170_P001 | Maize | cytosol | 10.14 | 8.78 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 14.86 | 8.58 |
| Zm00001d010850_P003 | Maize | plasma membrane | 14.86 | 8.52 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 0.36 | 0.85 |
| Zm00001d052871_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A1D6PZJ1 | ProteinID:AQK51842.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF85 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000844AD3D |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d050047 | EnsemblPlants:Zm00001d050047_P001 |
| EnsemblPlants:Zm00001d050047_T001 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:62395674..62407098
Molecular Weight (calculated)
29710.5 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.354
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVLQSQARM EEGPTVGEGR PQNTMCEYRG VGQVGGQDLR AQQAHLPLAR LLRHRVLYGL DGCDHSVLAP PPPPLRPLPS LVPGPLFRCA EPRRRGQGVR
101: QPQPLASVPQ QGPSHAHTAA CEPAQLILLG AHGPPEWKEV FDDPLLPLMV DIGYGAQILT GHKENAEFVL AMCPAEPYVL SGGKDKSVVL WSIQDHISAL
201: GDSLSSPRAS GSKQSVKTTN EKENPKVDPR GIFHGHDNTV EDVEFCPSSA QEFCSVGNDA CLILWDARTG TAPAVK
101: QPQPLASVPQ QGPSHAHTAA CEPAQLILLG AHGPPEWKEV FDDPLLPLMV DIGYGAQILT GHKENAEFVL AMCPAEPYVL SGGKDKSVVL WSIQDHISAL
201: GDSLSSPRAS GSKQSVKTTN EKENPKVDPR GIFHGHDNTV EDVEFCPSSA QEFCSVGNDA CLILWDARTG TAPAVK
001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
Arabidopsis Description
MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.