CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82696	Canola	nucleus	89.61	68.64
CDY35867	Canola	cytosol	56.68	67.25
CDX81933	Canola	nucleus	91.39	63.64
Bra040678.1-P	Field mustard	nucleus	93.47	63.38
CDY48711	Canola	nucleus	91.69	61.43
CDY21661	Canola	nucleus	91.99	61.26
CDY03358	Canola	nucleus	91.1	60.91
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	41.25	60.43
AT2G19520.1	Thale cress	nucleus	90.21	59.96
GSMUA_Achr4P08720_001	Banana	cytosol	72.4	59.95
EES01357	Sorghum	nucleus	75.96	56.51
CDY06779	Canola	nucleus	80.42	55.88
Os01t0710000-01	Rice	nucleus	73.89	54.97
KRH12388	Soybean	nucleus	82.79	54.92
KRH37388	Soybean	nucleus	83.09	54.58
TraesCS3B01G280400.1	Wheat	nucleus	76.26	54.56
TraesCS3A01G250900.2	Wheat	cytosol	76.26	54.56
Zm00001d043683_P001	Maize	cytosol	33.23	54.37
TraesCS3D01G251300.2	Wheat	nucleus	75.96	54.35
GSMUA_Achr7P24160_001	Banana	nucleus	38.58	54.17
CDY43523	Canola	nucleus	76.26	54.11
VIT_11s0016g02170.t01	Wine grape	nucleus	78.04	51.77
Solyc07g039330.2.1	Tomato	nucleus	57.57	51.46
CDY70287	Canola	nucleus	27.6	50.82
HORVU3Hr1G066930.1	Barley	plastid	76.26	50.49
GSMUA_Achr3P32330_001	Banana	cytosol	26.11	48.89
Zm00001d011705_P002	Maize	cytosol	72.7	47.12
Zm00001d043682_P002	Maize	cytosol, plastid	72.4	46.12
GSMUA_Achr7P09120_001	Banana	nucleus	60.24	44.62
Zm00001d050047_P001	Maize	nucleus	29.38	35.87
CDY70131	Canola	cytosol	16.91	27.27
CDY43875	Canola	nucleus	28.49	22.54
CDY62688	Canola	nucleus	28.19	22.3
CDY02805	Canola	nucleus	27.0	21.72
CDY32715	Canola	nucleus	26.71	21.63
CDY47479	Canola	cytosol	26.11	21.26
CDY26787	Canola	cytosol	26.11	21.26
CDY03357	Canola	plastid	24.63	17.55
CDX81935	Canola	nucleus	24.63	17.47
CDY48712	Canola	plastid	24.33	17.41
CDY43325	Canola	cytosol	16.32	17.35
CDX90175	Canola	cytosol	16.32	17.35
CDY21659	Canola	nucleus	24.33	17.34
CDY50786	Canola	cytosol	16.02	17.03
CDX99799	Canola	cytosol	16.02	17.03
CDY35872	Canola	cytosol, nucleus, plastid	16.32	16.18
CDX82701	Canola	nucleus	17.8	15.46
CDX88663	Canola	nucleus	28.19	14.94
CDY58569	Canola	cytosol	28.19	14.94
Zm00001d052871_P001	Maize	cytosol	0.0	0.0

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A078GYU9	EnsemblPlants:CDY29763	ProteinID:CDY29763	ProteinID:CDY29763.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00043618001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978	SignalP:SignalP-noTM	UniParc:UPI0004EDF4EE
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA01g19030DBnaA01g19030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYU9]

Coordinates

chrLK032243:+:313540..315858

Molecular Weight (calculated)

37076.3 Da

IEP (calculated)

5.706

GRAVY (calculated)

-0.371

Length

337 amino acids

Sequence
(BLAST)

001: MFSGHFFHFG GFVCCLAIGR WGPQLEQATY KNRQRLYLSE QTDGSVPNTL VIANCEVVKP RFNEEARSPF VKKYKTIIHP GEVNRIRELP QNSKIIATHT
101: DSPDVLIWDV ETQPNRHAVL GAATSRPDLI LTGHQDNAEF ALAMCPTEPF VLSGGKDKSV VLWSIQDHIT TVGTDSKSSG SIIKQTGEGG DKTESPSVGP
201: RGVYHGHNDT VEDVAFSPTS AQEFCSVGDD SCLILWDART GTSPVTKVEK AHDADLHCVD WNPHDDNLIL TGSADNTVRL YDRRNLTSNG VGTPIYKFEG
301: HRAAVLCVQW CPDKSSVFGS SAEDGLLNIW DYDRVCT

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.