CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48712	Canola	plastid	98.94	99.36
CDY21659	Canola	nucleus	95.14	95.14
CDX81935	Canola	nucleus	94.29	93.89
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	88.16	88.91
CDX82701	Canola	nucleus	71.88	87.63
CDY35872	Canola	cytosol, nucleus, plastid	61.52	85.59
VIT_11s0016g02270.t01	Wine grape	nucleus	76.53	76.37
Os12t0132400-01	Rice	nucleus	24.1	74.51
KRH58776	Soybean	nucleus	73.15	73.15
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	45.45	70.49
PGSC0003DMT400034220	Potato	nucleus	69.56	70.15
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	69.34	70.09
KRH42676	Soybean	nucleus	72.3	69.23
Solyc07g039200.2.1	Tomato	nucleus	66.17	67.75
Os11t0134500-01	Rice	nucleus	63.85	64.95
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	65.54	64.32
TraesCS4B01G131200.1	Wheat	nucleus	65.33	64.11
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	65.12	63.9
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	65.12	63.9
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	51.16	63.85
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	64.27	63.6
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	64.06	63.26
Solyc05g014090.1.1	Tomato	mitochondrion	53.07	63.22
Zm00001d010850_P003	Maize	plasma membrane	63.42	62.37
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	60.47	61.77
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.73	60.46
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	61.31	60.04
OQU82815	Sorghum	mitochondrion	57.72	59.48
CDY29763	Canola	endoplasmic reticulum	17.55	24.63
CDY02805	Canola	nucleus	21.78	24.58
CDY32715	Canola	nucleus	21.35	24.28
CDY62688	Canola	nucleus	21.78	24.18
CDY43875	Canola	nucleus	21.56	23.94
CDY70131	Canola	cytosol	10.57	23.92
CDY26787	Canola	cytosol	20.72	23.67
CDY47479	Canola	cytosol	20.72	23.67
CDX81933	Canola	nucleus	23.26	22.73
CDY43523	Canola	nucleus	22.41	22.32
CDY48711	Canola	nucleus	23.47	22.07
CDY03358	Canola	nucleus	23.47	22.02
CDY21661	Canola	nucleus	23.47	21.94
CDY70287	Canola	nucleus	8.46	21.86
CDY06779	Canola	nucleus	22.41	21.86
CDY35867	Canola	cytosol	12.9	21.48
CDX82696	Canola	nucleus	19.24	20.68
CDX90175	Canola	cytosol	13.53	20.19
CDY43325	Canola	cytosol	13.32	19.87
CDY50786	Canola	cytosol	12.69	18.93
CDX99799	Canola	cytosol	12.69	18.93
CDY58569	Canola	cytosol	22.2	16.51
CDX88663	Canola	nucleus	22.2	16.51
Os12t0132300-02	Rice	cytosol	0.85	2.19
Os11t0134400-00	Rice	cytosol	0.85	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDY03357	ProteinID:CDY03357	ProteinID:CDY03357.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00115981001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EB2E7C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC09g09910D

Coordinates

chrLK031942:-:1022755..1025444

Molecular Weight (calculated)

51906.5 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.446

Length

473 amino acids

Sequence
(BLAST)

001: MVRSINPKKA KRKNKKKGEA SSSASVPSMP TRVWQPGVDK LEEGEELQCD PSAYNSLHGF HVGWPCLSFD ILGDKLGLNR TEFPHTLYMV AGTQAEKAPL
101: NSIGLFKISN VSGKRRDVVP KTVVNGDDAM EDEDDEDEDS DSDEESEDGA STTPIIQVRR VAHHGCVNRI RAMPQNPHIC VSWADSGHVQ VWDMSSHLIA
201: LAESETEGKD GTSPALNQAP LVNFSGHKDE GYAIDWSPAT AGRLLSGDCM SMIHLWEPAS GSWTVDPIPL TGHTASVEDL QWSPAEANVF ASCSVDGTIA
301: LWDVRVGKTP ALSFKAHNAD VNVISWNRLA SCMLASGSDD GAFSIHDLRV IKEGDAKVAH FEYHKHPITS IEWSAHESST LAVSSGDNQL TIWDLSLEKD
401: EEEEAEFKAQ TKEYVNTPQD LPPQLLFVHQ GQKDLKELHW HNQIPGMIIS TAEDGFNILM PYNIQNTLPD LAA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.