Factsheet for Os11t0134500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 16990291

gfp PMID: 16990291 doi

MJ Han, KH Jung, G Yi, DY Lee, G An

National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0132400-01	Rice	nucleus	32.04	97.39
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	83.44	81.0
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	83.44	80.5
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	82.58	80.33
TraesCS4B01G131200.1	Wheat	nucleus	83.23	80.29
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	83.01	80.08
Zm00001d010850_P003	Maize	plasma membrane	82.8	80.04
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	82.58	79.67
OQU82815	Sorghum	mitochondrion	74.62	75.6
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	73.12	72.65
VIT_11s0016g02270.t01	Wine grape	nucleus	70.54	69.2
KRH58776	Soybean	nucleus	68.6	67.44
PGSC0003DMT400034220	Potato	nucleus	66.24	65.67
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	42.8	65.25
Solyc07g039200.2.1	Tomato	nucleus	63.87	64.29
CDY48712	Canola	plastid	64.95	64.12
CDY03357	Canola	plastid	64.95	63.85
KRH42676	Soybean	nucleus	67.74	63.77
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	64.3	63.75
Bra040681.1-P	Field mustard	cytosol	49.25	63.26
CDY21659	Canola	nucleus	64.3	63.21
CDX81935	Canola	nucleus	64.3	62.95
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.34	62.36
CDX82701	Canola	nucleus	50.11	60.05
Solyc05g014090.1.1	Tomato	mitochondrion	50.97	59.7
CDY35872	Canola	cytosol, nucleus, plastid	43.23	59.12
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	47.1	57.78
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	56.99	57.24
Os09t0540600-01	Rice	cytosol	22.58	25.61
Os03t0640100-01	Rice	cytosol	23.23	25.23
Os01t0710000-01	Rice	nucleus	23.01	23.62
Os02t0245100-01	Rice	cytosol, golgi, plastid	15.27	22.05
Os12t0132300-02	Rice	cytosol	1.08	2.73
Os11t0134400-00	Rice	cytosol	1.08	2.73

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4349700	ProteinID:ABA91317.1	EMBL:AK111725	ProteinID:BAF27522.1
ProteinID:BAT12554.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlantsGene:Os11g0134500	EnsemblPlants:Os11t0134500-01	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	UniProt:Q2RAX1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000682523
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015617150.1	SEG:seg

Description

OsWD40-182WD40 repeat-like domain containing protein. (Os11t0134500-01)

Coordinates

chr11:-:1610977..1615242

Molecular Weight (calculated)

51838.5 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.462

Length

465 amino acids

Sequence
(BLAST)

001: MGRKIKVKKK KASSKKAEAS SSRVPSAPAK VWQPGVDTLE EGEELQFDPQ AYNYLRGFNI GWPCLSFDVV RDQLGLVRSE FPHTLYGVAG TQAERATWNY
101: IGIFKICNIN GKKREPIPAS AIDGDSDMDS ESSSDEEDEA VNEDTMPILH LKKVAHAGCV NRIRSMNQEP HICATWGDTG HVQVWDFSSF LNSLAESGAV
201: AHNEDDRIHN HVPVKIFGSH KDEGYAIDWS PLVTGRLVSG DCNKCIHLWE PTSNSWNVDT NPFVGHTASV EDLQWSPTEA DIFASCSADR TISIWDIRTG
301: KKPCISVRAH NADVNVISWN RLASCMIASG CDDGSFSIRD LRLIKDDSLV AHFEYHKHPI TSVEWSPHEP STLAVSSADH QLTIWDLSLE KDAEEEAEFR
401: ARMREQADAP EDLPPQLLFV HQGQKDLKEL HWHPQIPSMI ISTAADGFNM LMPSNIDTTI READA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.