Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G373900.1 | Wheat | cytosol | 91.3 | 92.74 |
| EES04830 | Sorghum | cytosol, peroxisome, plastid | 91.93 | 92.21 |
| Zm00001d016170_P001 | Maize | cytosol | 90.68 | 91.54 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 69.88 | 70.75 |
| Bra032295.1-P | Field mustard | cytosol | 63.98 | 64.98 |
| CDX99799 | Canola | cytosol | 63.98 | 64.98 |
| CDY50786 | Canola | cytosol | 63.66 | 64.67 |
| CDY43325 | Canola | cytosol | 63.35 | 64.35 |
| Bra010844.1-P | Field mustard | cytosol | 63.04 | 64.04 |
| AT1G29260.1 | Thale cress | cytosol | 62.73 | 63.72 |
| CDX90175 | Canola | cytosol | 62.73 | 63.72 |
| PGSC0003DMT400023242 | Potato | cytosol | 61.8 | 62.97 |
| PGSC0003DMT400022498 | Potato | cytosol | 61.8 | 62.97 |
| KRH21268 | Soybean | cytosol | 61.8 | 62.58 |
| Solyc03g062940.2.1 | Tomato | cytosol | 61.18 | 62.34 |
| KRH11018 | Soybean | cytosol | 59.32 | 62.01 |
| HORVU3Hr1G082800.3 | Barley | cytosol, mitochondrion | 56.21 | 56.21 |
| VIT_10s0003g01320.t01 | Wine grape | cytosol | 63.66 | 52.56 |
| GSMUA_Achr10P... | Banana | mitochondrion | 48.45 | 48.75 |
| Os09t0540600-01 | Rice | cytosol | 23.6 | 18.54 |
| Os12t0132400-01 | Rice | nucleus | 8.7 | 18.3 |
| Os03t0640100-01 | Rice | cytosol | 23.29 | 17.52 |
| Os01t0710000-01 | Rice | nucleus | 22.67 | 16.11 |
| Os11t0134500-01 | Rice | nucleus | 22.05 | 15.27 |
| Os12t0132300-02 | Rice | cytosol | 0.31 | 0.55 |
| Os11t0134400-00 | Rice | cytosol | 0.31 | 0.55 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:23.4.1.1.2 | EntrezGene:4328861 | EMBL:AK111709 | EMBL:AK112004 | EMBL:AK112008 |
| ProteinID:BAD27735.1 | ProteinID:BAF08333.1 | ProteinID:BAS77864.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006625 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EnsemblPlantsGene:Os02g0245100 | EnsemblPlants:Os02t0245100-01 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF183 | UniProt:Q6EUD4 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI00003CE4D2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| RefSeq:XP_015624658.1 | SEG:seg | : | : | : | : |
Description
OsWD40-39Similar to Peroxisomal targeting signal type 2 receptor. (Os02t0245100-01);Conserved hypothetical protein. (Os02t0245100-02)
Coordinates
chr2:-:8205190..8206393
Molecular Weight (calculated)
35444.9 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.125
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAFKAPAPG FSVRFSPFHE QRLLAAASQH FGLVGNGHLL VLDLSAAAAP GGAPAPPPVF AFPTSDALFD CAWSESHESL CAAASGDGSV RLFDVALPPA
101: QNPVRLLREH AREVHGLDWN PVRRDAFLSA SWDDTLKLWS PDRPASVRTF RGHEYCVYAA AWSARHPDVF ASASGDRTAR VWDVREPAPT LVIPAHDHEV
201: LSLDWDKYDP SILATGSVDK SIRVWDVRAP RAPLAQLAGH GYAVKRVKFS PHRQGMLMSC SYDMTVCMWD YRKEDALLAR YGHHTEFVAG IDMSVLVEGL
301: LASTGWDEMI YVWPFGSDPR AM
101: QNPVRLLREH AREVHGLDWN PVRRDAFLSA SWDDTLKLWS PDRPASVRTF RGHEYCVYAA AWSARHPDVF ASASGDRTAR VWDVREPAPT LVIPAHDHEV
201: LSLDWDKYDP SILATGSVDK SIRVWDVRAP RAPLAQLAGH GYAVKRVKFS PHRQGMLMSC SYDMTVCMWD YRKEDALLAR YGHHTEFVAG IDMSVLVEGL
301: LASTGWDEMI YVWPFGSDPR AM
001: MPVFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELAPGAPG VTESVSYDTA DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
Arabidopsis Description
PEX7Peroxisome biogenesis protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XF57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.