Factsheet for Os04t0643100-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0837300-02
Os04t0429800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	Os03t0837300-02	AT2G23420.1	21798944
AT3G58730.1	Os04t0429800-01	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	94.42	94.42
Zm00001d002105_P001	Maize	plasma membrane	93.31	93.31
Zm00001d024242_P001	Maize	mitochondrion, plastid	92.94	92.94
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	92.19	91.85
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	91.82	91.48
TraesCS2A01G520400.1	Wheat	golgi	91.82	91.48
GSMUA_Achr1P17380_001	Banana	mitochondrion	80.3	82.13
GSMUA_AchrUn_...	Banana	cytosol	60.97	79.61
KRH47345	Soybean	endoplasmic reticulum	75.46	78.68
CDX67762	Canola	mitochondrion	58.74	78.22
AT3G58730.1	Thale cress	mitochondrion	75.84	78.16
KRH44559	Soybean	endoplasmic reticulum	74.72	77.91
CDX89001	Canola	mitochondrion	58.74	77.83
Bra003352.1-P	Field mustard	mitochondrion	75.46	77.78
CDY00584	Canola	mitochondrion	58.36	77.72
CDX98325	Canola	mitochondrion	58.36	77.72
CDY49248	Canola	mitochondrion	57.99	77.23
Bra014555.1-P	Field mustard	mitochondrion	57.99	77.23
Bra007415.1-P	Field mustard	mitochondrion	74.72	77.01
CDX71929	Canola	mitochondrion	57.99	76.85
PGSC0003DMT400074548	Potato	mitochondrion	74.35	76.63
Solyc01g073690.2.1	Tomato	nucleus	69.52	76.02
VIT_15s0024g00250.t01	Wine grape	plastid	31.23	65.62
PGSC0003DMT400080629	Potato	cytosol	25.28	60.18

Protein Annotations

MapMan:24.1.1.2.4	EntrezGene:4337176	EMBL:AK067501	EMBL:AK106989	ProteinID:BAF15962.1	ProteinID:BAS91280.1
ProteinID:CAD41902.2	ProteinID:CAE05976.2	ncoils:Coil	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:Os04g0643100	EnsemblPlants:Os04t0643100-01	PFAM:PF01813
PANTHER:PTHR11671	UniProt:Q7XJX6	TIGRFAMs:TIGR00309	UniParc:UPI00001B0BDB	InterPro:V_ATPase_D	RefSeq:XP_015636169.1
SEG:seg	:	:	:	:	:

Description

Similar to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D subunit). (Os04t0643100-01);Similar to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D subunit). (Os04t0643100-02)

Coordinates

chr4:+:32732642..32735542

Molecular Weight (calculated)

29182.5 Da

IEP (calculated)

10.500

GRAVY (calculated)

-0.137

Length

269 amino acids

Sequence
(BLAST)

001: MSGQTQRLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRAILK KIVAAKESMG EAMRASSFSL AEAKYVAGDG VRHVVLQSVR SASLRVRSHQ
101: ENVAGVKLPK FTHFVDPAAG SAGPSNASPS LTGLARGGQQ VAACRAAHVK AIEVLVELAS LQTSFLTLDE AIKTTNRRVN ALENVVKPRL ENTISYIKGE
201: LDELEREDFF RLKKIQGYKK REIERQMAAA KQFAEEQLAE EVALKRGISV GAATNMLVAG GERDEDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.