CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY46076
CDY63965

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	CDY46076	AT2G23420.1	21798944
AT3G58730.1	CDY63965	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89001	Canola	mitochondrion	99.5	99.01
CDX67762	Canola	mitochondrion	98.51	98.51
Bra014555.1-P	Field mustard	mitochondrion	98.02	98.02
CDX98325	Canola	mitochondrion	98.02	98.02
CDY49248	Canola	mitochondrion	98.02	98.02
CDX71929	Canola	mitochondrion	98.02	97.54
AT3G58730.1	Thale cress	mitochondrion	95.54	73.95
KRH44559	Soybean	endoplasmic reticulum	76.73	60.08
GSMUA_Achr1P17380_001	Banana	mitochondrion	78.22	60.08
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.7	59.85
PGSC0003DMT400074548	Potato	mitochondrion	77.23	59.77
KRH47345	Soybean	endoplasmic reticulum	76.24	59.69
Zm00001d024242_P001	Maize	mitochondrion, plastid	78.71	59.11
Zm00001d002105_P001	Maize	plasma membrane	78.71	59.11
Solyc01g073690.2.1	Tomato	nucleus	71.29	58.54
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.72	58.36
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.24	57.04
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.24	57.04
TraesCS2A01G520400.1	Wheat	golgi	75.74	56.67
PGSC0003DMT400080629	Potato	cytosol	30.69	54.87
GSMUA_AchrUn_...	Banana	cytosol	54.46	53.4
VIT_12s0028g01260.t01	Wine grape	cytosol	78.22	52.84
TraesCS6D01G135900.1	Wheat	mitochondrion	63.86	48.68
TraesCS6A01G146600.1	Wheat	mitochondrion	63.37	48.3
TraesCS6B01G174800.1	Wheat	mitochondrion	62.87	47.39
Zm00001d024465_P001	Maize	plastid	62.38	47.37
HORVU6Hr1G028720.1	Barley	vacuole	61.39	44.77
OQU79969	Sorghum	mitochondrion	42.08	41.26

Protein Annotations

EnsemblPlants:CDY00584	EnsemblPlantsGene:GSBRNA2T00110346001	GO:A0A078EIM2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0016787	GO:GO:0042626	InterPro:V_ATPase_D	PANTHER:PTHR11671	PFAM:PF01813	ProteinID:CDY00584
ProteinID:CDY00584.1	UniParc:UPI0004EDE2A7	MapMan:24.1.1.2.4	:	:	:

Description

BnaC04g23410D

Coordinates

chrLK031920:-:469431..470670

Molecular Weight (calculated)

22444.6 Da

IEP (calculated)

10.394

GRAVY (calculated)

-0.198

Length

202 amino acids

Sequence
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGEN VKHVVLENVK EATLKTSFLT
101: LDEAIKTTNR RVNALENVVK PKIENTISYI KGELDELERE DFFRLKKIQG YKRREVERQA ANTKAFAEEM VLEGISMQRG ISINAARSLL VGGGEKDADI
201: IF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.