CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
mitochondrion 5
golgi 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	golgi, mitochondrion, plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG26318
OQU90665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	KXG26318	AT2G23420.1	21798944
AT3G58730.1	OQU90665	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002105_P001	Maize	plasma membrane	98.88	98.88
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	94.42	94.42
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	91.82	91.48
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	91.45	91.11
TraesCS2A01G520400.1	Wheat	golgi	91.45	91.11
GSMUA_Achr1P17380_001	Banana	mitochondrion	79.18	80.99
CDX67762	Canola	mitochondrion	60.22	80.2
CDX89001	Canola	mitochondrion	60.22	79.8
CDX98325	Canola	mitochondrion	59.85	79.7
CDY00584	Canola	mitochondrion	59.85	79.7
Bra003352.1-P	Field mustard	mitochondrion	76.95	79.31
CDY49248	Canola	mitochondrion	59.48	79.21
Bra014555.1-P	Field mustard	mitochondrion	59.48	79.21
AT3G58730.1	Thale cress	mitochondrion	76.58	78.93
CDX71929	Canola	mitochondrion	59.48	78.82
Bra007415.1-P	Field mustard	mitochondrion	76.21	78.54
GSMUA_AchrUn_...	Banana	cytosol	59.85	78.16
KRH44559	Soybean	endoplasmic reticulum	74.35	77.52
KRH47345	Soybean	endoplasmic reticulum	74.35	77.52
Solyc01g073690.2.1	Tomato	nucleus	69.89	76.42
PGSC0003DMT400074548	Potato	mitochondrion	73.98	76.25
OQU79969	Sorghum	mitochondrion	51.3	66.99
VIT_15s0024g00250.t01	Wine grape	plastid	30.48	64.06
PGSC0003DMT400080629	Potato	cytosol	26.02	61.95

Protein Annotations

EnsemblPlants:EES12954	EnsemblPlantsGene:SORBI_3006G237200	EntrezGene:8068468	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	InterPro:V_ATPase_D
PANTHER:PTHR11671	PFAM:PF01813	ProteinID:EES12954	ProteinID:EES12954.1	RefSeq:XP_002448626.1	SEG:seg
TIGRFAMs:TIGR00309	unigene:Sbi.3244	UniParc:UPI0001A873D0	UniProt:C5Y8Z9	MapMan:24.1.1.2.4	:

Description

hypothetical protein

Coordinates

chr6:-:57856599..57860447

Molecular Weight (calculated)

29074.4 Da

IEP (calculated)

10.474

GRAVY (calculated)

-0.089

Length

269 amino acids

Sequence
(BLAST)

001: MAGQNQRLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRAILK KIVAAKESMG ETMRASSFSL AEAKYVAGDG VRHVVLQSVR AASVRVRSHQ
101: ENVAGVKLPK FTHFVDPAAA SGGPSNASPS LTGLARGGQQ VAACRAAHVK AIEVLVELAS LQTSFLTLDE AIKTTNRRVN ALENVVKPRI ENTISYIKGE
201: LDELEREDFF RLKKIQGYKK REIERQMAAA KLFAEEQLAE DLALKRGISV GAAANLLVAG GEKDDDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.