Factsheet for VIT_15s0024g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	65.62	40.78
GSMUA_Achr1P17380_001	Banana	mitochondrion	68.75	33.46
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.62	31.23
TraesCS2A01G520400.1	Wheat	golgi	65.62	31.11
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.62	31.11
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.62	31.11
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	64.06	30.48
Zm00001d002105_P001	Maize	plasma membrane	64.06	30.48
Zm00001d024242_P001	Maize	mitochondrion, plastid	63.28	30.11
VIT_12s0028g01260.t01	Wine grape	cytosol	69.53	29.77
TraesCS6D01G135900.1	Wheat	mitochondrion	53.91	26.04
TraesCS6B01G174800.1	Wheat	mitochondrion	53.91	25.75
TraesCS6A01G146600.1	Wheat	mitochondrion	53.12	25.66
Zm00001d024465_P001	Maize	plastid	51.56	24.81
HORVU6Hr1G028720.1	Barley	vacuole	52.34	24.19
OQU79969	Sorghum	mitochondrion	35.94	22.33

Protein Annotations

MapMan:24.1.1.2.4	EMBL:AM474025	ProteinID:CAN79392	ProteinID:CAN79392.1	ProteinID:CCB62197	ProteinID:CCB62197.1
ncoils:Coil	UniProt:F6I5H9	EMBL:FN596748	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0042626	GO:GO:0055085	PFAM:PF01813	PANTHER:PTHR11671	TIGRFAMs:TIGR00309	UniParc:UPI0002108BF5
ArrayExpress:VIT_15s0024g00250	EnsemblPlantsGene:VIT_15s0024g00250	EnsemblPlants:VIT_15s0024g00250.t01	InterPro:V_ATPase_D	:	:

Description

No Description!

Coordinates

chr15:+:355864..356278

Molecular Weight (calculated)

14301.1 Da

IEP (calculated)

8.480

GRAVY (calculated)

-0.359

Length

128 amino acids

Sequence
(BLAST)

001: MLLGRTSSTL YVLENVQNAS LKVRSRQENV AGVKVPPSSN ISQKVTPRMP SRDWPEVANR SSYVKAIEVL VELASLQTSF LTLDEAIKTT NRRVNALENV
101: VKPRLENTIN CIKGELDELE REDFSSGL

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.