Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G135900.1 | Wheat | mitochondrion | 96.27 | 97.36 |
| TraesCS6A01G146600.1 | Wheat | mitochondrion | 95.52 | 96.6 |
| HORVU6Hr1G028720.1 | Barley | vacuole | 94.03 | 90.97 |
| Zm00001d024465_P001 | Maize | plastid | 77.24 | 77.82 |
| OQU79969 | Sorghum | mitochondrion | 55.97 | 72.82 |
| TraesCS2B01G549600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 70.9 | 70.37 |
| PGSC0003DMT400074548 | Potato | mitochondrion | 64.93 | 66.67 |
| Solyc01g073690.2.1 | Tomato | nucleus | 60.82 | 66.26 |
| GSMUA_Achr1P17380_001 | Banana | mitochondrion | 62.69 | 63.88 |
| AT3G58730.1 | Thale cress | mitochondrion | 61.94 | 63.6 |
| Bra003352.1-P | Field mustard | mitochondrion | 61.94 | 63.6 |
| CDX67762 | Canola | mitochondrion | 47.76 | 63.37 |
| Bra007415.1-P | Field mustard | mitochondrion | 61.57 | 63.22 |
| KRH44559 | Soybean | endoplasmic reticulum | 60.82 | 63.18 |
| CDX89001 | Canola | mitochondrion | 47.76 | 63.05 |
| CDX98325 | Canola | mitochondrion | 47.39 | 62.87 |
| CDY00584 | Canola | mitochondrion | 47.39 | 62.87 |
| CDY49248 | Canola | mitochondrion | 47.39 | 62.87 |
| CDX71929 | Canola | mitochondrion | 47.39 | 62.56 |
| KRH47345 | Soybean | endoplasmic reticulum | 60.07 | 62.4 |
| Bra014555.1-P | Field mustard | mitochondrion | 47.01 | 62.38 |
| GSMUA_AchrUn_... | Banana | cytosol | 45.9 | 59.71 |
| VIT_15s0024g00250.t01 | Wine grape | plastid | 25.75 | 53.91 |
| PGSC0003DMT400080629 | Potato | cytosol | 21.64 | 51.33 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G174800.1 | EnsemblPlantsGene:TraesCS6B01G174800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0016787 |
| GO:GO:0042626 | InterPro:V_ATPase_D | PANTHER:PTHR11671 | PFAM:PF01813 | SEG:seg | TIGRFAMs:TIGR00309 |
| MapMan:24.1.1.2.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:189277024..189277830
Molecular Weight (calculated)
29076.4 Da
IEP (calculated)
10.188
GRAVY (calculated)
-0.119
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQGQRLNV VPTVTVMGMI KARLAAATRG HALLKKKSDA LTMQFRAILK RIVAAKEAVG DSMRGASLSL AEALYVAGGP LRHVIQQSVT GPARLRVRAH
101: HDNIAGVRLP CFEHFMDGAG ARAPLLAGLA GGGQQVSACR AAHVRAIELL VELASLQTSF LTLDEAIKTT NRRVNALEHV VKPQLENTVT YIRGELDEQE
201: REEFFRLKKI QAVKQRELER QMESAKLYAG EKVAGEVALK RGVSLGTAAT MLDNGDGQRD EDIIFGYT
101: HDNIAGVRLP CFEHFMDGAG ARAPLLAGLA GGGQQVSACR AAHVRAIELL VELASLQTSF LTLDEAIKTT NRRVNALEHV VKPQLENTVT YIRGELDEQE
201: REEFFRLKKI QAVKQRELER QMESAKLYAG EKVAGEVALK RGVSLGTAAT MLDNGDGQRD EDIIFGYT
001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
Arabidopsis Description
VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.