Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010254 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G58730.1 | PGSC0003DMT400010254 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 62.83 | 34.47 |
| Solyc01g073690.2.1 | Tomato | nucleus | 74.34 | 34.15 |
| PGSC0003DMT400074548 | Potato | mitochondrion | 77.88 | 33.72 |
| CDX67762 | Canola | mitochondrion | 56.64 | 31.68 |
| CDX98325 | Canola | mitochondrion | 56.64 | 31.68 |
| CDY49248 | Canola | mitochondrion | 55.75 | 31.19 |
| CDX71929 | Canola | mitochondrion | 55.75 | 31.03 |
| CDX89001 | Canola | mitochondrion | 55.75 | 31.03 |
| Bra014555.1-P | Field mustard | mitochondrion | 54.87 | 30.69 |
| CDY00584 | Canola | mitochondrion | 54.87 | 30.69 |
| Zm00001d002105_P001 | Maize | plasma membrane | 62.83 | 26.39 |
| Zm00001d024242_P001 | Maize | mitochondrion, plastid | 61.95 | 26.02 |
| EES12954 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 61.95 | 26.02 |
| TraesCS2B01G549600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 61.95 | 25.93 |
| TraesCS2D01G521600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 61.95 | 25.93 |
| GSMUA_Achr1P17380_001 | Banana | mitochondrion | 60.18 | 25.86 |
| KRH47345 | Soybean | endoplasmic reticulum | 58.41 | 25.58 |
| KRH44559 | Soybean | endoplasmic reticulum | 58.41 | 25.58 |
| TraesCS2A01G520400.1 | Wheat | golgi | 61.06 | 25.56 |
| AT3G58730.1 | Thale cress | mitochondrion | 58.41 | 25.29 |
| Os04t0643100-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 60.18 | 25.28 |
| Bra003352.1-P | Field mustard | mitochondrion | 57.52 | 24.9 |
| Bra007415.1-P | Field mustard | mitochondrion | 56.64 | 24.52 |
| VIT_12s0028g01260.t01 | Wine grape | cytosol | 61.06 | 23.08 |
| Zm00001d024465_P001 | Maize | plastid | 53.1 | 22.56 |
| TraesCS6A01G146600.1 | Wheat | mitochondrion | 51.33 | 21.89 |
| TraesCS6B01G174800.1 | Wheat | mitochondrion | 51.33 | 21.64 |
| TraesCS6D01G135900.1 | Wheat | mitochondrion | 50.44 | 21.51 |
| HORVU6Hr1G028720.1 | Barley | vacuole | 49.56 | 20.22 |
| OQU79969 | Sorghum | mitochondrion | 11.5 | 6.31 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400080629 | EnsemblPlantsGene:PGSC0003DMG400031396 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016787 | GO:GO:0042626 | GO:GO:0055085 | InterPro:V_ATPase_D | ncoils:Coil |
| PANTHER:PTHR11671 | PFAM:PF01813 | PGSC:PGSC0003DMG400031396 | UniParc:UPI0002966151 | UniProt:M1D3R7 | MapMan:24.1.1.2.4 |
Description
ATP synthase subunit d [Source:PGSC_GENE;Acc:PGSC0003DMG400031396]
Coordinates
chr9:+:41637402..41637743
Molecular Weight (calculated)
13239.1 Da
IEP (calculated)
9.659
GRAVY (calculated)
-0.347
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIYAIHEII RIFKYNILSN RRVTALENVV KPRLENTLLY IKGELNELER EDFFHLKKIQ GYKKREVEKQ MAAARLYAVE KAAEDISLKR GISLSSAHNL
101: LSHVSHKDED IVF
101: LSHVSHKDED IVF
001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
Arabidopsis Description
VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.