Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003674_P001 | |
| Zm00001d003675_P001 | |
| Zm00001d025412_P001 | |
| Zm00001d034777_P005 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79969 | Sorghum | mitochondrion | 60.9 | 78.64 |
| TraesCS6A01G146600.1 | Wheat | mitochondrion | 78.2 | 78.49 |
| TraesCS6D01G135900.1 | Wheat | mitochondrion | 77.82 | 78.11 |
| TraesCS6B01G174800.1 | Wheat | mitochondrion | 77.82 | 77.24 |
| HORVU6Hr1G028720.1 | Barley | vacuole | 78.2 | 75.09 |
| Zm00001d002105_P001 | Maize | plasma membrane | 66.92 | 66.17 |
| Zm00001d024242_P001 | Maize | mitochondrion, plastid | 66.54 | 65.8 |
| PGSC0003DMT400074548 | Potato | mitochondrion | 62.03 | 63.22 |
| KRH47345 | Soybean | endoplasmic reticulum | 61.28 | 63.18 |
| KRH44559 | Soybean | endoplasmic reticulum | 61.28 | 63.18 |
| GSMUA_Achr1P17380_001 | Banana | mitochondrion | 62.41 | 63.12 |
| CDX67762 | Canola | mitochondrion | 47.74 | 62.87 |
| CDX89001 | Canola | mitochondrion | 47.74 | 62.56 |
| CDY00584 | Canola | mitochondrion | 47.37 | 62.38 |
| CDX98325 | Canola | mitochondrion | 47.37 | 62.38 |
| Solyc01g073690.2.1 | Tomato | nucleus | 57.52 | 62.2 |
| CDY49248 | Canola | mitochondrion | 46.99 | 61.88 |
| Bra014555.1-P | Field mustard | mitochondrion | 46.99 | 61.88 |
| Bra003352.1-P | Field mustard | mitochondrion | 60.53 | 61.69 |
| CDX71929 | Canola | mitochondrion | 46.99 | 61.58 |
| Bra007415.1-P | Field mustard | mitochondrion | 59.77 | 60.92 |
| AT3G58730.1 | Thale cress | mitochondrion | 59.77 | 60.92 |
| GSMUA_AchrUn_... | Banana | cytosol | 45.11 | 58.25 |
| PGSC0003DMT400080629 | Potato | cytosol | 22.56 | 53.1 |
| VIT_15s0024g00250.t01 | Wine grape | plastid | 24.81 | 51.56 |
Protein Annotations
| EnsemblPlants:Zm00001d024465_P001 | EnsemblPlants:Zm00001d024465_T001 | EnsemblPlantsGene:Zm00001d024465 | EntrezGene:103641218 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016787 | GO:GO:0042626 | GO:GO:0055085 |
| InterPro:V_ATPase_D | ncoils:Coil | PANTHER:PTHR11671 | PFAM:PF01813 | ProteinID:AQK41253.1 | SEG:seg |
| TIGRFAMs:TIGR00309 | UniParc:UPI0002210F13 | UniProt:K7TLG8 | MapMan:24.1.1.2.4 | : | : |
Description
V-type proton ATPase subunit D
Coordinates
chr10:-:72127774..72128574
Molecular Weight (calculated)
28518.2 Da
IEP (calculated)
10.338
GRAVY (calculated)
-0.226
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQGQRLNV VPTVTTLGTV KARLAGAARG HALLKKKSDA LTVQFRAILR RIVSAKDAVG DAMRTASLSL AEALYAAGAP LRHAAQQSVS GPARLRVRAH
101: QDNIAGVRLP RFESCLGAAD GSSSPASLAG LAGGGQQVSA CRAAHARALQ VLVELAPLQT SFLALDAAIK TTNRRVNALE SVVKPRLENT IAYIRGELDE
201: HEREEFFRLK KIQGYKQREL ERQKEAASRY AEEKAAGEVA LKRGVSVATA ESMLENGDRD EEDIIF
101: QDNIAGVRLP RFESCLGAAD GSSSPASLAG LAGGGQQVSA CRAAHARALQ VLVELAPLQT SFLALDAAIK TTNRRVNALE SVVKPRLENT IAYIRGELDE
201: HEREEFFRLK KIQGYKQREL ERQKEAASRY AEEKAAGEVA LKRGVSVATA ESMLENGDRD EEDIIF
001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
Arabidopsis Description
VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.