Factsheet for Zm00001d024242_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003674_P001
Zm00001d003675_P001
Zm00001d025412_P001
Zm00001d034777_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	Zm00001d003674_P001	AT2G23420.1	21798944
AT3G58730.1	Zm00001d003675_P001	AT2G23420.1	21798944
AT3G58730.1	Zm00001d025412_P001	AT2G23420.1	21798944
AT3G58730.1	Zm00001d034777_P005	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002105_P001	Maize	plasma membrane	98.14	98.14
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	92.94	92.94
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.33	90.0
TraesCS2A01G520400.1	Wheat	golgi	89.96	89.63
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	89.96	89.63
CDX67762	Canola	mitochondrion	59.85	79.7
GSMUA_Achr1P17380_001	Banana	mitochondrion	77.7	79.47
CDX98325	Canola	mitochondrion	59.48	79.21
CDY49248	Canola	mitochondrion	59.48	79.21
Bra003352.1-P	Field mustard	mitochondrion	76.58	78.93
CDX89001	Canola	mitochondrion	59.48	78.82
CDX71929	Canola	mitochondrion	59.48	78.82
CDY00584	Canola	mitochondrion	59.11	78.71
Bra007415.1-P	Field mustard	mitochondrion	76.21	78.54
Bra014555.1-P	Field mustard	mitochondrion	58.74	78.22
AT3G58730.1	Thale cress	mitochondrion	75.84	78.16
KRH44559	Soybean	endoplasmic reticulum	73.98	77.13
KRH47345	Soybean	endoplasmic reticulum	73.98	77.13
GSMUA_AchrUn_...	Banana	cytosol	58.74	76.7
Solyc01g073690.2.1	Tomato	nucleus	69.52	76.02
PGSC0003DMT400074548	Potato	mitochondrion	73.61	75.86
Zm00001d024465_P001	Maize	plastid	65.8	66.54
VIT_15s0024g00250.t01	Wine grape	plastid	30.11	63.28
PGSC0003DMT400080629	Potato	cytosol	26.02	61.95

Protein Annotations

EntrezGene:100193069	MapMan:24.1.1.2.4	ProteinID:AQK40896.1	UniProt:B4FDN9	EMBL:BT035227	EMBL:BT087360
EMBL:EU959232	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0006810	GO:GO:0008150
GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	PFAM:PF01813	PANTHER:PTHR11671	TIGRFAMs:TIGR00309
UniParc:UPI00017B64DD	InterPro:V_ATPase_D	EnsemblPlantsGene:Zm00001d024242	EnsemblPlants:Zm00001d024242_P001	EnsemblPlants:Zm00001d024242_T001	SEG:seg

Description

V-type proton ATPase subunit D

Coordinates

chr10:+:59229280..59230089

Molecular Weight (calculated)

29131.4 Da

IEP (calculated)

10.500

GRAVY (calculated)

-0.119

Length

269 amino acids

Sequence
(BLAST)

001: MAGQNQRLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRAILK KIVAAKESMG ETMRASSFSL AEAKYVAGDG VRHVVLQSIR AASVRVRSHQ
101: ENVAGVKLPK FTHFVDPAAA SGGPSNASPS LTGLARGGQQ VAACRAAHVK AIEVLVELAS LQTSFLTLDE AIKTTNRRVN ALENVVKPRI ENTISYIKGE
201: LDELEREDFF RLKKIQGYKK REIERQMANA RLFAEEQLAE DLALKRGISV GAAANLLAAG GEKDDDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.