Factsheet for Bra003352.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	golgi, mitochondrion, nucleus, plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra039198.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	Bra039198.1-P	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67762	Canola	mitochondrion	77.39	100.0
CDX98325	Canola	mitochondrion	77.01	99.5
Bra007415.1-P	Field mustard	mitochondrion	98.85	98.85
Bra014555.1-P	Field mustard	mitochondrion	75.48	97.52
AT3G58730.1	Thale cress	mitochondrion	96.17	96.17
Solyc01g073690.2.1	Tomato	nucleus	76.63	81.3
PGSC0003DMT400074548	Potato	mitochondrion	81.23	81.23
KRH44559	Soybean	endoplasmic reticulum	78.54	79.46
KRH47345	Soybean	endoplasmic reticulum	78.16	79.07
GSMUA_Achr1P17380_001	Banana	mitochondrion	79.31	78.71
GSMUA_AchrUn_...	Banana	cytosol	61.3	77.67
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.31	76.95
Zm00001d024242_P001	Maize	mitochondrion, plastid	78.93	76.58
Zm00001d002105_P001	Maize	plasma membrane	78.54	76.21
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.78	75.46
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.63	74.07
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.63	74.07
TraesCS2A01G520400.1	Wheat	golgi	76.25	73.7
VIT_12s0028g01260.t01	Wine grape	cytosol	81.61	71.24
TraesCS6D01G135900.1	Wheat	mitochondrion	63.98	63.02
TraesCS6A01G146600.1	Wheat	mitochondrion	63.22	62.26
TraesCS6B01G174800.1	Wheat	mitochondrion	63.6	61.94
Zm00001d024465_P001	Maize	plastid	61.69	60.53
OQU79969	Sorghum	mitochondrion	45.98	58.25
HORVU6Hr1G028720.1	Barley	vacuole	61.69	58.12
PGSC0003DMT400080629	Potato	cytosol	24.9	57.52

Protein Annotations

EnsemblPlants:Bra003352.1	EnsemblPlants:Bra003352.1-P	EnsemblPlantsGene:Bra003352	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	InterPro:V_ATPase_D
PANTHER:PTHR11671	PFAM:PF01813	TIGRFAMs:TIGR00309	UniParc:UPI00025416A1	UniProt:M4CGL9	MapMan:24.1.1.2.4

Description

AT3G58730 (E=9e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)

Coordinates

chrA07:-:12755209..12755994

Molecular Weight (calculated)

28923.3 Da

IEP (calculated)

10.175

GRAVY (calculated)

-0.239

Length

261 amino acids

Sequence
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGEN VKHVVLENVK EATLKVRSRQ
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVQACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KIENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKAFAEEMV LEGISMQRGI SINAARNLLE GGGEKDADII F

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.