Factsheet for VIT_12s0028g01260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g00460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	VIT_07s0031g00460.t01	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g073690.2.1	Tomato	nucleus	69.57	84.55
PGSC0003DMT400074548	Potato	mitochondrion	73.58	84.29
KRH44559	Soybean	endoplasmic reticulum	72.24	83.72
KRH47345	Soybean	endoplasmic reticulum	72.24	83.72
Bra003352.1-P	Field mustard	mitochondrion	71.24	81.61
Bra007415.1-P	Field mustard	mitochondrion	70.9	81.23
AT3G58730.1	Thale cress	mitochondrion	70.57	80.84
CDX67762	Canola	mitochondrion	53.51	79.21
CDX98325	Canola	mitochondrion	53.51	79.21
CDY49248	Canola	mitochondrion	53.18	78.71
CDX71929	Canola	mitochondrion	53.18	78.33
CDX89001	Canola	mitochondrion	53.18	78.33
CDY00584	Canola	mitochondrion	52.84	78.22
Bra014555.1-P	Field mustard	mitochondrion	52.17	77.23
VIT_15s0024g00250.t01	Wine grape	plastid	29.77	69.53
PGSC0003DMT400080629	Potato	cytosol	23.08	61.06

Protein Annotations

EntrezGene:100259129	wikigene:100259129	MapMan:24.1.1.2.4	ProteinID:CCB47428	ProteinID:CCB47428.1	ncoils:Coil
UniProt:F6H560	EMBL:FN595235	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0006810
GO:GO:0008150	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	EntrezGene:LOC100259129	wikigene:LOC100259129
PFAM:PF01813	PANTHER:PTHR11671	TIGR:TC57523	TIGRFAMs:TIGR00309	UniParc:UPI0002109A9B	ArrayExpress:VIT_12s0028g01260
EnsemblPlantsGene:VIT_12s0028g01260	EnsemblPlants:VIT_12s0028g01260.t01	InterPro:V_ATPase_D	unigene:Vvi.3362	RefSeq:XP_002282632	RefSeq:XP_002282632.1
RefSeq:XP_003633257	RefSeq:XP_003633257.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:1899698..1903502

Molecular Weight (calculated)

33426.6 Da

IEP (calculated)

9.277

GRAVY (calculated)

-0.209

Length

299 amino acids

Sequence
(BLAST)

001: MVFKSMDALG DGPEANYFSV VVIMDCEFIS LSCHNFDKMS GQSQRLTVVP TVTMLGVMKA RLVGATRGHA LLKKKSDALT VQFRQILKKI VSTKESMGEV
101: MKASSFALTE AKYVAGENIK HVVLENVQNA SLKVRSRQEN VAGVKLPKFE YFNEGETKND LTGLARGGQQ VQLCRAAYVK AIEVLVELAS LQTSFLTLDD
201: AIKTTNRRVN ALENVVKPRL ENTIIYIKGE LDELEREDFF RLKKIQGYKK REMERQMASA KEFSEDQFAG KVSLQKGISL NAAHNLLSAA MEKDEDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.