Factsheet for Bra014555.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	golgi
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra039198.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	Bra039198.1-P	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89001	Canola	mitochondrion	98.51	98.03
CDY00584	Canola	mitochondrion	98.02	98.02
Bra003352.1-P	Field mustard	mitochondrion	97.52	75.48
Bra007415.1-P	Field mustard	mitochondrion	97.03	75.1
AT3G58730.1	Thale cress	mitochondrion	95.05	73.56
GSMUA_Achr1P17380_001	Banana	mitochondrion	77.72	59.7
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.21	59.48
KRH44559	Soybean	endoplasmic reticulum	75.74	59.3
PGSC0003DMT400074548	Potato	mitochondrion	76.24	59.0
KRH47345	Soybean	endoplasmic reticulum	75.25	58.91
Zm00001d024242_P001	Maize	mitochondrion, plastid	78.22	58.74
Zm00001d002105_P001	Maize	plasma membrane	78.22	58.74
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.23	57.99
Solyc01g073690.2.1	Tomato	nucleus	70.3	57.72
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.74	56.67
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.74	56.67
TraesCS2A01G520400.1	Wheat	golgi	75.25	56.3
PGSC0003DMT400080629	Potato	cytosol	30.69	54.87
GSMUA_AchrUn_...	Banana	cytosol	53.96	52.91
VIT_12s0028g01260.t01	Wine grape	cytosol	77.23	52.17
TraesCS6A01G146600.1	Wheat	mitochondrion	62.87	47.92
TraesCS6D01G135900.1	Wheat	mitochondrion	62.87	47.92
TraesCS6B01G174800.1	Wheat	mitochondrion	62.38	47.01
Zm00001d024465_P001	Maize	plastid	61.88	46.99
HORVU6Hr1G028720.1	Barley	vacuole	60.89	44.4
OQU79969	Sorghum	mitochondrion	42.08	41.26

Protein Annotations

EnsemblPlants:Bra014555.1	EnsemblPlants:Bra014555.1-P	EnsemblPlantsGene:Bra014555	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	InterPro:V_ATPase_D
PANTHER:PTHR11671	PFAM:PF01813	UniParc:UPI0002543FED	UniProt:M4DDI7	MapMan:24.1.1.2.4	:

Description

AT3G58730 (E=3e-050) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)

Coordinates

chrA04:+:1432325..1433110

Molecular Weight (calculated)

22369.6 Da

IEP (calculated)

10.647

GRAVY (calculated)

-0.174

Length

202 amino acids

Sequence
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGKN VKHVVLENVK EATLKTSFLT
101: LDEAIKTTNR RVKALENVVK PKIENTISYI KGELDELERE DFFRLKKIQG YKRREVERQA ANAKAFAEEM VLEGISMQRG ISINAARSLL VGGGEKDAGI
201: IF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.