Factsheet for TraesCS6D01G135900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2B01G318300.2
TraesCS2D01G301100.1
TraesCS4A01G354500.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT3G58730.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT3G58730.1	TraesCS5D01G517600.1	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G146600.1	Wheat	mitochondrion	96.98	96.98
TraesCS6B01G174800.1	Wheat	mitochondrion	97.36	96.27
HORVU6Hr1G028720.1	Barley	vacuole	94.72	90.61
Zm00001d024465_P001	Maize	plastid	78.11	77.82
OQU79969	Sorghum	mitochondrion	56.98	73.3
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.57	69.26
PGSC0003DMT400074548	Potato	mitochondrion	65.66	66.67
Solyc01g073690.2.1	Tomato	nucleus	61.51	66.26
GSMUA_Achr1P17380_001	Banana	mitochondrion	63.77	64.26
AT3G58730.1	Thale cress	mitochondrion	63.02	63.98
Bra003352.1-P	Field mustard	mitochondrion	63.02	63.98
KRH44559	Soybean	endoplasmic reticulum	62.26	63.95
CDY00584	Canola	mitochondrion	48.68	63.86
CDX67762	Canola	mitochondrion	48.68	63.86
Bra007415.1-P	Field mustard	mitochondrion	62.64	63.6
CDX89001	Canola	mitochondrion	48.68	63.55
CDX98325	Canola	mitochondrion	48.3	63.37
CDY49248	Canola	mitochondrion	48.3	63.37
KRH47345	Soybean	endoplasmic reticulum	61.51	63.18
CDX71929	Canola	mitochondrion	48.3	63.05
Bra014555.1-P	Field mustard	mitochondrion	47.92	62.87
GSMUA_AchrUn_...	Banana	cytosol	46.42	59.71
VIT_15s0024g00250.t01	Wine grape	plastid	26.04	53.91
PGSC0003DMT400080629	Potato	cytosol	21.51	50.44

Protein Annotations

EnsemblPlants:TraesCS6D01G135900.1	EnsemblPlantsGene:TraesCS6D01G135900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0016787
GO:GO:0042626	InterPro:V_ATPase_D	PANTHER:PTHR11671	PFAM:PF01813	SEG:seg	TIGRFAMs:TIGR00309
MapMan:24.1.1.2.4	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:104146301..104147098

Molecular Weight (calculated)

28851.2 Da

IEP (calculated)

10.601

GRAVY (calculated)

-0.156

Length

265 amino acids

Sequence
(BLAST)

001: MAGQGQRLNV VPTVTVMGMI KARLAAATRG HALLKKKSDA LTVQFRAILK RIVTAKEAVG DSMRGASLSL AEALYVAGGP LRHVIQQSVT GPARLRVRVR
101: HDNIAGVRLP RFEHFMDGAG ARAPLLAGLA GGGQQVSACR AAHARAIELL VELASLQTSF LTLDEAIKTT NRRVNALEHV VKPQLENTVT YIRGELDEQE
201: REEFFRLKKI QAVKQRELER QMESPKLYAG EKVAGEVALK RGVSLGTAAT MLDNGDGQRD EDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.