Factsheet for HORVU6Hr1G028720.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
YLoc:	cytosol

vacuole: 16581873
vacuole: 19391183

msms PMID: 16581873 doi

A Endler, S Meyer, S Schelbert, T Schneider, W Weschke, SW Peters, F Keller, S Baginsky, E Martinoia, UG Schmidt

University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.

msms PMID: 19391183 doi

T Schneider, M Schellenberg, S Meyer, F Keller, P Gehrig, K Riedel, Y Lee, L Eberl, E Martinoia

Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, Zurich, Switzerland. Thomas.Schneider@botinst.uzh.ch

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G074990.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	HORVU2Hr1G074990.1	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G135900.1	Wheat	mitochondrion	90.61	94.72
TraesCS6A01G146600.1	Wheat	mitochondrion	90.61	94.72
TraesCS6B01G174800.1	Wheat	mitochondrion	90.97	94.03
Zm00001d024465_P001	Maize	plastid	75.09	78.2
OQU79969	Sorghum	mitochondrion	54.51	73.3
Solyc01g073690.2.1	Tomato	nucleus	58.12	65.45
PGSC0003DMT400074548	Potato	mitochondrion	61.37	65.13
GSMUA_Achr1P17380_001	Banana	mitochondrion	59.21	62.36
AT3G58730.1	Thale cress	mitochondrion	58.48	62.07
CDX67762	Canola	mitochondrion	45.13	61.88
CDX98325	Canola	mitochondrion	45.13	61.88
CDY49248	Canola	mitochondrion	45.13	61.88
Bra003352.1-P	Field mustard	mitochondrion	58.12	61.69
Bra007415.1-P	Field mustard	mitochondrion	58.12	61.69
KRH44559	Soybean	endoplasmic reticulum	57.4	61.63
CDX89001	Canola	mitochondrion	45.13	61.58
CDX71929	Canola	mitochondrion	45.13	61.58
CDY00584	Canola	mitochondrion	44.77	61.39
Bra014555.1-P	Field mustard	mitochondrion	44.4	60.89
KRH47345	Soybean	endoplasmic reticulum	56.68	60.85
GSMUA_AchrUn_...	Banana	cytosol	42.6	57.28
VIT_15s0024g00250.t01	Wine grape	plastid	24.19	52.34
PGSC0003DMT400080629	Potato	cytosol	20.22	49.56

Protein Annotations

MapMan:24.1.1.2.4	UniProt:A0A287TQH2	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005794	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:HORVU6Hr1G028720	EnsemblPlants:HORVU6Hr1G028720.1	PFAM:PF01813	PANTHER:PTHR11671
TIGRFAMs:TIGR00309	UniParc:UPI000B464F21	InterPro:V_ATPase_D	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr6H:+:115086161..115087175

Molecular Weight (calculated)

29824.1 Da

IEP (calculated)

10.498

GRAVY (calculated)

-0.215

Length

277 amino acids

Sequence
(BLAST)

001: AKKKENVHTQ GGMAGQGQRL NVVPTVTVMG MIKARLAAAT RGHALLKKKS DALTVQFRAI LKRIVAAKQA VGDSMRGASL SLAEALYAAG GPLRHAIQQS
101: VTGPARLRVR AHHDNIAGVL LPRFQHSTDG AGATAPLLAG LAGGGQQVSA CRAAHARAIE LLVELASLQT SFLTLDEAIK TTNRRVNALE HVVKPQLENT
201: VTYIRGELDE QEREEFFRLK KIQAVKQREL ERQMESAKLY AGEKVAGEVA LKRGVSLGTA ATMLDNGDDQ RDDDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.