Factsheet for PGSC0003DMT400074548

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	golgi, nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010254

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	PGSC0003DMT400010254	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g073690.2.1	Tomato	nucleus	92.34	97.97
KRH47345	Soybean	endoplasmic reticulum	80.46	81.4
KRH44559	Soybean	endoplasmic reticulum	80.46	81.4
Bra003352.1-P	Field mustard	mitochondrion	81.23	81.23
Bra007415.1-P	Field mustard	mitochondrion	80.84	80.84
AT3G58730.1	Thale cress	mitochondrion	80.46	80.46
GSMUA_Achr1P17380_001	Banana	mitochondrion	80.46	79.85
CDX98325	Canola	mitochondrion	60.54	78.22
CDX67762	Canola	mitochondrion	60.54	78.22
PGSC0003DMT400080629	Potato	cytosol	33.72	77.88
CDY49248	Canola	mitochondrion	60.15	77.72
CDX71929	Canola	mitochondrion	60.15	77.34
CDX89001	Canola	mitochondrion	60.15	77.34
CDY00584	Canola	mitochondrion	59.77	77.23
GSMUA_AchrUn_...	Banana	cytosol	60.54	76.7
Bra014555.1-P	Field mustard	mitochondrion	59.0	76.24
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.01	74.44
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.01	74.44
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.63	74.35
TraesCS2A01G520400.1	Wheat	golgi	76.63	74.07
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.25	73.98
Zm00001d002105_P001	Maize	plasma membrane	75.86	73.61
Zm00001d024242_P001	Maize	mitochondrion, plastid	75.86	73.61
VIT_12s0028g01260.t01	Wine grape	cytosol	84.29	73.58
TraesCS6D01G135900.1	Wheat	mitochondrion	66.67	65.66
TraesCS6A01G146600.1	Wheat	mitochondrion	66.28	65.28
TraesCS6B01G174800.1	Wheat	mitochondrion	66.67	64.93
Zm00001d024465_P001	Maize	plastid	63.22	62.03
HORVU6Hr1G028720.1	Barley	vacuole	65.13	61.37
OQU79969	Sorghum	mitochondrion	44.83	56.8

Protein Annotations

EntrezGene:102592386	MapMan:24.1.1.2.4	ProteinID:ABF00099	ProteinID:ABF00099.1	EMBL:DQ423182	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0042626
GO:GO:0055085	UniProt:M1CTV1	PFAM:PF01813	EnsemblPlantsGene:PGSC0003DMG400028976	PGSC:PGSC0003DMG400028976	EnsemblPlants:PGSC0003DMT400074548
PANTHER:PTHR11671	TIGRFAMs:TIGR00309	UniParc:UPI000295CC76	InterPro:V_ATPase_D	RefSeq:XP_006359140.1	SEG:seg

Description

ATP synthase subunit d [Source:PGSC_GENE;Acc:PGSC0003DMG400028976]

Coordinates

chr1:+:67037348..67042571

Molecular Weight (calculated)

29037.3 Da

IEP (calculated)

10.273

GRAVY (calculated)

-0.295

Length

261 amino acids

Sequence
(BLAST)

001: MSGQTNRLVV VPTVTMLGVI KARLVGATRG HALLKKKSDA LTVQFRQILK KIVSTKESMG DVMKNSSFAL TEAKYAAGEN IKHVVLENVQ TATLKVRSRQ
101: ENIAGVKLPK FEHFSEGETK NDLTGLARGG QQVQACRAAY VKSIELLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP RLENTVLYIK GELDELERED
201: FFRLKKIQGY KKREVEKQMA AARLYAAEKA AEDISLKRGI SLGSAHNLLS HPSQKDEDII F

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.