Factsheet for GSMUA_AchrUn_randomP07490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P08220_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT3G58730.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P17380_001	Banana	mitochondrion	92.72	72.62
VIT_15s0024g00250.t01	Wine grape	plastid	40.78	65.62
Solyc01g073690.2.1	Tomato	nucleus	75.73	63.41
PGSC0003DMT400080629	Potato	cytosol	34.47	62.83
Bra003352.1-P	Field mustard	mitochondrion	77.67	61.3
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.61	60.97
Bra007415.1-P	Field mustard	mitochondrion	77.18	60.92
AT3G58730.1	Thale cress	mitochondrion	77.18	60.92
KRH47345	Soybean	endoplasmic reticulum	76.21	60.85
KRH44559	Soybean	endoplasmic reticulum	76.21	60.85
PGSC0003DMT400074548	Potato	mitochondrion	76.7	60.54
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	78.16	59.85
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	78.16	59.63
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.67	59.26
Zm00001d002105_P001	Maize	plasma membrane	77.18	59.11
TraesCS2A01G520400.1	Wheat	golgi	77.18	58.89
Zm00001d024242_P001	Maize	mitochondrion, plastid	76.7	58.74
CDX67762	Canola	mitochondrion	54.37	55.45
CDX98325	Canola	mitochondrion	54.37	55.45
CDY49248	Canola	mitochondrion	53.88	54.95
CDX71929	Canola	mitochondrion	53.88	54.68
CDX89001	Canola	mitochondrion	53.88	54.68
CDY00584	Canola	mitochondrion	53.4	54.46
Bra014555.1-P	Field mustard	mitochondrion	52.91	53.96
TraesCS6D01G135900.1	Wheat	mitochondrion	59.71	46.42
TraesCS6A01G146600.1	Wheat	mitochondrion	59.22	46.04
TraesCS6B01G174800.1	Wheat	mitochondrion	59.71	45.9
Zm00001d024465_P001	Maize	plastid	58.25	45.11
HORVU6Hr1G028720.1	Barley	vacuole	57.28	42.6
OQU79969	Sorghum	mitochondrion	36.89	36.89

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP07490_001	EnsemblPlants:GSMUA_AchrUn_randomT07490_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG07490_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	InterPro:V_ATPase_D
ncoils:Coil	PANTHER:PTHR11671	PFAM:PF01813	TIGRFAMs:TIGR00309	UniParc:UPI0002952A72	UniProt:M0U760
MapMan:24.1.1.2.4	:	:	:	:	:

Description

V-type proton ATPase subunit D [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG07490_001]

Coordinates

chrchrUn_random:+:32373760..32380099

Molecular Weight (calculated)

23234.9 Da

IEP (calculated)

8.950

GRAVY (calculated)

-0.400

Length

206 amino acids

Sequence
(BLAST)

001: MGEIMRNSSF ALTEVKYVAG DNIKHVVLES VKSASLRVRS RQENVAGVKL PRFEHFVDHG AGDAKSDLTG LARGGQQIQA CRVAYVKAIE VLVELASLQT
101: SFLTLDEAIK TTNRRVNALE NVVKPRLENT INYIKGELDE LEREDFFRLK KIQGYKKREI ERQQQAAKNF AEEQYAEKIS LKKGISINSA HNLLTVGVEK
201: DEDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.