Factsheet for Zm00001d002105_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
plasma membrane: 23353019
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003674_P001
Zm00001d003675_P001
Zm00001d025412_P001
Zm00001d034777_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	Zm00001d003674_P001	AT2G23420.1	21798944
AT3G58730.1	Zm00001d003675_P001	AT2G23420.1	21798944
AT3G58730.1	Zm00001d025412_P001	AT2G23420.1	21798944
AT3G58730.1	Zm00001d034777_P005	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	98.88	98.88
Zm00001d024242_P001	Maize	mitochondrion, plastid	98.14	98.14
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	93.31	93.31
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.71	90.37
TraesCS2A01G520400.1	Wheat	golgi	90.33	90.0
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.33	90.0
GSMUA_Achr1P17380_001	Banana	mitochondrion	78.44	80.23
CDX67762	Canola	mitochondrion	59.48	79.21
CDX89001	Canola	mitochondrion	59.48	78.82
CDX98325	Canola	mitochondrion	59.11	78.71
CDY00584	Canola	mitochondrion	59.11	78.71
Bra003352.1-P	Field mustard	mitochondrion	76.21	78.54
CDY49248	Canola	mitochondrion	58.74	78.22
Bra014555.1-P	Field mustard	mitochondrion	58.74	78.22
AT3G58730.1	Thale cress	mitochondrion	75.84	78.16
CDX71929	Canola	mitochondrion	58.74	77.83
Bra007415.1-P	Field mustard	mitochondrion	75.46	77.78
GSMUA_AchrUn_...	Banana	cytosol	59.11	77.18
KRH47345	Soybean	endoplasmic reticulum	73.61	76.74
KRH44559	Soybean	endoplasmic reticulum	73.61	76.74
Solyc01g073690.2.1	Tomato	nucleus	69.52	76.02
PGSC0003DMT400074548	Potato	mitochondrion	73.61	75.86
Zm00001d024465_P001	Maize	plastid	66.17	66.92
VIT_15s0024g00250.t01	Wine grape	plastid	30.48	64.06
PGSC0003DMT400080629	Potato	cytosol	26.39	62.83

Protein Annotations

EMBL:BT041074	EnsemblPlants:Zm00001d002105_P001	EnsemblPlants:Zm00001d002105_T001	EnsemblPlantsGene:Zm00001d002105	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085
InterPro:V_ATPase_D	PANTHER:PTHR11671	PFAM:PF01813	ProteinID:ONM13072.1	SEG:seg	TIGRFAMs:TIGR00309
UniParc:UPI00017B76FC	UniProt:B4FVD6	MapMan:24.1.1.2.4	:	:	:

Description

V-type proton ATPase subunit D

Coordinates

chr2:-:6001996..6002805

Molecular Weight (calculated)

29132.4 Da

IEP (calculated)

10.500

GRAVY (calculated)

-0.100

Length

269 amino acids

Sequence
(BLAST)

001: MAGQNQRLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRAILK KIVAAKESMG ETMRASSFSL AEAKYVAGDG VRHVILQSVR AASVRVRSHQ
101: ENVAGVKLPK FTHFVDPAAA SGGPSNASPS LTGLARGGQQ VAACRSAHVK AIEVLVELAS LQTSFLTLDE AIKTTNRRVN ALENVVKPRI ENTISYIKGE
201: LDELEREDFF RLKKIQGYKK REIERQMAAA RLFAEEQLAE DLALKRGISV GAAANLLVAG GEKDDDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.