Factsheet for TraesCS2A01G520400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2B01G318300.2
TraesCS2D01G301100.1
TraesCS4A01G354500.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT3G58730.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT3G58730.1	TraesCS5D01G517600.1	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	99.26	99.26
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	98.52	98.52
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	91.48	91.82
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	91.11	91.45
Zm00001d002105_P001	Maize	plasma membrane	90.0	90.33
Zm00001d024242_P001	Maize	mitochondrion, plastid	89.63	89.96
GSMUA_Achr1P17380_001	Banana	mitochondrion	77.78	79.85
KRH47345	Soybean	endoplasmic reticulum	74.07	77.52
KRH44559	Soybean	endoplasmic reticulum	74.07	77.52
GSMUA_AchrUn_...	Banana	cytosol	58.89	77.18
AT3G58730.1	Thale cress	mitochondrion	74.44	77.01
PGSC0003DMT400074548	Potato	mitochondrion	74.07	76.63
CDX89001	Canola	mitochondrion	57.41	76.35
Bra003352.1-P	Field mustard	mitochondrion	73.7	76.25
CDX67762	Canola	mitochondrion	57.04	76.24
CDY00584	Canola	mitochondrion	56.67	75.74
CDX98325	Canola	mitochondrion	56.67	75.74
Solyc01g073690.2.1	Tomato	nucleus	68.89	75.61
Bra007415.1-P	Field mustard	mitochondrion	72.96	75.48
CDX71929	Canola	mitochondrion	56.67	75.37
CDY49248	Canola	mitochondrion	56.3	75.25
Bra014555.1-P	Field mustard	mitochondrion	56.3	75.25
TraesCS6A01G146600.1	Wheat	mitochondrion	68.52	69.81
VIT_15s0024g00250.t01	Wine grape	plastid	31.11	65.62
PGSC0003DMT400080629	Potato	cytosol	25.56	61.06

Protein Annotations

EnsemblPlants:TraesCS2A01G520400.1	EnsemblPlantsGene:TraesCS2A01G520400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0016787
GO:GO:0042626	InterPro:V_ATPase_D	ncoils:Coil	PANTHER:PTHR11671	PFAM:PF01813	SEG:seg
TIGRFAMs:TIGR00309	MapMan:24.1.1.2.4	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:743113750..743114562

Molecular Weight (calculated)

29201.4 Da

IEP (calculated)

10.500

GRAVY (calculated)

-0.156

Length

270 amino acids

Sequence
(BLAST)

001: MSGQSQRLNV VPTVTMLGVV KARLIGATRG HALLKKKSDA LTVQFRAILK KIVATKESMG EAMRASSFSL AEAKYVAGDG VRHVVLQSVR SASLRVRSHQ
101: ENVAGVKLPK FTHFVDPAGA SSGGPSGASP SLTGLARGGQ QVSACRAAHV KAIEVLVELA SLQTSFLTLD EAIKTTNRRV NALENVVKPR LENTITYIKG
201: ELDELEREDF FRLKKIQGYK RREVERQMAA AKLFAEEQLA EDLALKRGTS MGATTNILVG GGDKDEDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.