Factsheet for Solyc01g073690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g093290.2.1
Solyc03g044430.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	Solyc02g093290.2.1	AT2G23420.1	21798944
AT3G58730.1	Solyc03g044430.2.1	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074548	Potato	mitochondrion	97.97	92.34
Bra003352.1-P	Field mustard	mitochondrion	81.3	76.63
Bra007415.1-P	Field mustard	mitochondrion	80.89	76.25
KRH47345	Soybean	endoplasmic reticulum	79.67	75.97
KRH44559	Soybean	endoplasmic reticulum	79.67	75.97
GSMUA_AchrUn_...	Banana	cytosol	63.41	75.73
AT3G58730.1	Thale cress	mitochondrion	80.08	75.48
GSMUA_Achr1P17380_001	Banana	mitochondrion	80.08	74.9
PGSC0003DMT400080629	Potato	cytosol	34.15	74.34
CDX98325	Canola	mitochondrion	59.35	72.28
CDX67762	Canola	mitochondrion	59.35	72.28
CDY49248	Canola	mitochondrion	58.94	71.78
CDX89001	Canola	mitochondrion	58.94	71.43
CDX71929	Canola	mitochondrion	58.94	71.43
CDY00584	Canola	mitochondrion	58.54	71.29
Bra014555.1-P	Field mustard	mitochondrion	57.72	70.3
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.42	69.89
VIT_12s0028g01260.t01	Wine grape	cytosol	84.55	69.57
Os04t0643100-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.02	69.52
Zm00001d024242_P001	Maize	mitochondrion, plastid	76.02	69.52
Zm00001d002105_P001	Maize	plasma membrane	76.02	69.52
TraesCS2B01G549600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.02	69.26
TraesCS2D01G521600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	76.02	69.26
TraesCS2A01G520400.1	Wheat	golgi	75.61	68.89
TraesCS6D01G135900.1	Wheat	mitochondrion	66.26	61.51
TraesCS6A01G146600.1	Wheat	mitochondrion	65.85	61.13
TraesCS6B01G174800.1	Wheat	mitochondrion	66.26	60.82
HORVU6Hr1G028720.1	Barley	vacuole	65.45	58.12
Zm00001d024465_P001	Maize	plastid	62.2	57.52
OQU79969	Sorghum	mitochondrion	42.68	50.97

Protein Annotations

MapMan:24.1.1.2.4	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	GO:GO:0042626
GO:GO:0055085	UniProt:K4AXB5	PFAM:PF01813	PANTHER:PTHR11671	EnsemblPlantsGene:Solyc01g073690.2	EnsemblPlants:Solyc01g073690.2.1
TIGRFAMs:TIGR00309	UniParc:UPI0002761748	InterPro:V_ATPase_D	:	:	:

Description

No Description!

Coordinates

chr1:-:81054679..81055761

Molecular Weight (calculated)

27477.3 Da

IEP (calculated)

10.197

GRAVY (calculated)

-0.341

Length

246 amino acids

Sequence
(BLAST)

001: MLGVIKARLV GATRGHALLK KKSDALTVQF RQILKKIVST KESMGDVMKN SSFALTEAKY AAGENIKHVV LENVQTATLK VRSRQENIAG VKLPKFEHFS
101: EGETKNDLTG LARGGQQVQA CRAAYVKSIE LLVELASLQT SFLTLDEAIK TTNRRVNALE NVVKPRLENT VLYIKGELDE LEREDFFRLK KIQGYKKREV
201: EKQMAAARLY AAEKSAEEFS LKRGISLGSA HNLLSHASQK DDDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.