Factsheet for TraesCS6A01G146600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2B01G318300.2
TraesCS2D01G301100.1
TraesCS4A01G354500.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT3G58730.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT3G58730.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT3G58730.1	TraesCS5D01G517600.1	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G135900.1	Wheat	mitochondrion	96.98	96.98
TraesCS6B01G174800.1	Wheat	mitochondrion	96.6	95.52
HORVU6Hr1G028720.1	Barley	vacuole	94.72	90.61
Zm00001d024465_P001	Maize	plastid	78.49	78.2
OQU79969	Sorghum	mitochondrion	56.98	73.3
TraesCS2A01G520400.1	Wheat	golgi	69.81	68.52
PGSC0003DMT400074548	Potato	mitochondrion	65.28	66.28
Solyc01g073690.2.1	Tomato	nucleus	61.13	65.85
GSMUA_Achr1P17380_001	Banana	mitochondrion	63.4	63.88
CDX67762	Canola	mitochondrion	48.68	63.86
CDX89001	Canola	mitochondrion	48.68	63.55
CDX98325	Canola	mitochondrion	48.3	63.37
CDY00584	Canola	mitochondrion	48.3	63.37
CDY49248	Canola	mitochondrion	48.3	63.37
AT3G58730.1	Thale cress	mitochondrion	62.26	63.22
Bra003352.1-P	Field mustard	mitochondrion	62.26	63.22
KRH44559	Soybean	endoplasmic reticulum	61.51	63.18
CDX71929	Canola	mitochondrion	48.3	63.05
Bra014555.1-P	Field mustard	mitochondrion	47.92	62.87
Bra007415.1-P	Field mustard	mitochondrion	61.89	62.84
KRH47345	Soybean	endoplasmic reticulum	60.75	62.4
GSMUA_AchrUn_...	Banana	cytosol	46.04	59.22
VIT_15s0024g00250.t01	Wine grape	plastid	25.66	53.12
PGSC0003DMT400080629	Potato	cytosol	21.89	51.33

Protein Annotations

EnsemblPlants:TraesCS6A01G146600.1	EnsemblPlantsGene:TraesCS6A01G146600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0016787
GO:GO:0042626	InterPro:V_ATPase_D	PANTHER:PTHR11671	PFAM:PF01813	SEG:seg	TIGRFAMs:TIGR00309
MapMan:24.1.1.2.4	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:125541462..125542259

Molecular Weight (calculated)

28666.9 Da

IEP (calculated)

10.495

GRAVY (calculated)

-0.134

Length

265 amino acids

Sequence
(BLAST)

001: MAGQGQRLNV VPTVTVMGMI KARLAAATRG HALLKKKSDA LTVQFRAILK RIVAAKEAVG DSMRGASLSL AEALYVAGGP LRHVIQQSVA GPARLRVRAR
101: HDNIAGVRLP RFEHFTDGAG ARAPLLAGLA GGGEQVSACR AAHARAVELL VELASLQTSF LTLDEAIKTT NRRVNALEHV VKPQLENTVT YIRGELDEQE
201: REEFFRLKKI QAVKQRELER QMESAKLYAG EKVAGEVALK RGVSLGTAAT MLDSGDGQRD EDIIF

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.