CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG26318
OQU90665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58730.1	KXG26318	AT2G23420.1	21798944
AT3G58730.1	OQU90665	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024465_P001	Maize	plastid	78.64	60.9
TraesCS6D01G135900.1	Wheat	mitochondrion	73.3	56.98
TraesCS6A01G146600.1	Wheat	mitochondrion	73.3	56.98
TraesCS6B01G174800.1	Wheat	mitochondrion	72.82	55.97
HORVU6Hr1G028720.1	Barley	vacuole	73.3	54.51
EES12954	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.99	51.3
GSMUA_Achr1P17380_001	Banana	mitochondrion	60.19	47.15
KRH47345	Soybean	endoplasmic reticulum	58.74	46.9
KRH44559	Soybean	endoplasmic reticulum	58.74	46.9
Bra003352.1-P	Field mustard	mitochondrion	58.25	45.98
Bra007415.1-P	Field mustard	mitochondrion	58.25	45.98
AT3G58730.1	Thale cress	mitochondrion	57.28	45.21
PGSC0003DMT400074548	Potato	mitochondrion	56.8	44.83
Solyc01g073690.2.1	Tomato	nucleus	50.97	42.68
CDY49248	Canola	mitochondrion	41.26	42.08
CDY00584	Canola	mitochondrion	41.26	42.08
CDX98325	Canola	mitochondrion	41.26	42.08
CDX67762	Canola	mitochondrion	41.26	42.08
Bra014555.1-P	Field mustard	mitochondrion	41.26	42.08
CDX89001	Canola	mitochondrion	41.26	41.87
CDX71929	Canola	mitochondrion	41.26	41.87
GSMUA_AchrUn_...	Banana	cytosol	36.89	36.89
VIT_15s0024g00250.t01	Wine grape	plastid	22.33	35.94
PGSC0003DMT400080629	Potato	cytosol	6.31	11.5

Protein Annotations

EnsemblPlants:OQU79969	EnsemblPlantsGene:SORBI_3007G056400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0006810
GO:GO:0008150	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	InterPro:V_ATPase_D	PANTHER:PTHR11671
PFAM:PF01813	ProteinID:OQU79969	ProteinID:OQU79969.1	SEG:seg	TIGRFAMs:TIGR00309	UniParc:UPI000B8BA858
UniProt:A0A1Z5R8Q6	MapMan:24.1.1.2.4	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:5813065..5813802

Molecular Weight (calculated)

21593.3 Da

IEP (calculated)

11.077

GRAVY (calculated)

0.093

Length

206 amino acids

Sequence
(BLAST)

001: MAGQGQQRLN VVPTVTTLGM VKARLAGATR GHALLKKKSD ALTVQFRAIL KRIVSAKDAM GDAMRAASLS LAEALYVAGA PLRHVVQQSV SPGPARLRVR
101: AHQDNIAGVR LPRFQSYLAD DGGSSTSLAG LAGGGQQVAA CRAAHARALE VLVELASLQT TFLTLDAAIR TTNRREPVEA PMIIIEIELA VGVPAAKQQS
201: SVDTAQ

Best Arabidopsis Sequence Match ( AT3G58730.1 )
(BLAST)

001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F

Arabidopsis Description

VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.