CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89414
EER91632
EER95306
EER95442
EER97233
EES00535
EES02888
EES04915
EES09230
EES17768
EES18909
KXG24163
KXG28657
KXG32223
KXG37189
OQU79120
OQU79799

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23420.1	OQU79799	AT1G12310.1	21798944
AT2G23420.1	EES00535	AT1G14640.1	21798944
AT2G23420.1	KXG32223	AT1G14640.1	21798944
AT2G23420.1	EER89414	AT1G49590.1	21798944
AT2G23420.1	EES09230	AT1G50450.1	21798944
AT2G23420.1	KXG28657	AT1G50450.1	21798944
AT2G23420.1	OQU79120	AT1G50450.1	21798944
AT2G23420.1	EER91632	AT1G55270.1	21798944
AT2G23420.1	EER95442	AT1G55270.1	21798944
AT2G23420.1	EER97233	AT3G16250.1	21798944
AT2G23420.1	KXG24163	AT3G26420.1	21798944
AT2G23420.1	KXG37189	AT3G26420.1	21798944
AT2G23420.1	EES18909	AT3G55260.1	21798944
AT2G23420.1	EES02888	AT3G62250.1	21798944
AT2G23420.1	EES17768	AT3G62250.1	21798944
AT2G23420.1	EES04915	AT4G32750.1	21798944
AT2G23420.1	EER95306	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003674_P001	Maize	extracellular	44.56	94.07
Os04t0429800-01	Rice	plasma membrane, plastid	90.18	91.3
TraesCS2D01G301100.1	Wheat	golgi	90.18	90.81
TraesCS2B01G318300.2	Wheat	cytosol, peroxisome, plastid	90.18	90.81
TraesCS2A01G302400.1	Wheat	cytosol, peroxisome, plastid	89.82	90.46
HORVU2Hr1G075010.5	Barley	peroxisome	89.47	89.79
Zm00001d003675_P001	Maize	plastid	34.74	88.79
Zm00001d025412_P001	Maize	plastid	94.91	84.01
KRH04597	Soybean	cytosol	61.05	82.08
VIT_07s0031g00460.t01	Wine grape	cytosol	77.19	78.43
KRH57934	Soybean	cytosol, nucleus	76.49	78.28
CDY63965	Canola	cytosol	71.23	78.08
PGSC0003DMT400010254	Potato	cytosol	76.32	77.96
Solyc02g093290.2.1	Tomato	cytosol, extracellular, nucleus	76.32	77.96
OQU90665	Sorghum	peroxisome	77.19	77.74
AT2G23420.1	Thale cress	cytosol	75.61	77.38
CDY66512	Canola	cytosol	75.09	76.98
CDY46076	Canola	cytosol	75.09	76.98
Bra039198.1-P	Field mustard	cytosol	75.09	76.98
Bra017808.1-P	Field mustard	cytosol	70.7	76.62
CDY29537	Canola	cytosol	75.26	76.33
AT4G36940.1	Thale cress	cytosol	73.51	74.96
Solyc03g044430.2.1	Tomato	cytosol	74.21	74.73
KRH77015	Soybean	cytosol	71.75	73.3
KRH63322	Soybean	extracellular	8.77	60.24
KRH28456	Soybean	extracellular	18.77	56.61

Protein Annotations

KEGG:00760+6.3.4.21	Gene3D:3.20.140.10	Gene3D:3.20.20.70	MapMan:7.9.2.2	UniProt:A0A1B6PKX2	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0004514	GO:GO:0004516	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009435	GO:GO:0009987	GO:GO:0016740	GO:GO:0019358
InterPro:IPR013785	EnsemblPlants:KXG26318	ProteinID:KXG26318	ProteinID:KXG26318.1	InterPro:Nic_PRibTrfase-Fam	InterPro:Nic_PRibTrfase_pncB
InterPro:Nicotinate_pribotase_like_C	PFAM:PF04095	PIRSF:PIRSF000484	PANTHER:PTHR11098	PANTHER:PTHR11098:SF17	MetaCyc:PWY-5381
EnsemblPlantsGene:SORBI_3006G080900	SUPFAM:SSF51690	SUPFAM:SSF54675	TIGRFAMs:TIGR01513	UniParc:UPI00081AE216	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:44977205..44986805

Molecular Weight (calculated)

62825.4 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.046

Length

570 amino acids

Sequence
(BLAST)

001: MAATSAPPAS AHANGNGNGS LAGVAAPVGA PTNPMATALL TDQYQFSMAY AYWKAGKHAD RAVFDLYFRK NPFGGEFTVF AGLEECIKFI ANFKFTEDDI
101: SFLQSVMPIC EGAFFDYLRE VDCSDVEVYS IPEGSVVFPK VPLMRVEGPV AVVQLLETPF VNLINYASLV TTNAARHRHV AGKSKVLLEF GLRRAQGPDG
201: AISASKYCFM GGFDATSNVL AGHLFGIPLR GTHSHAFVSS YMSLDEIPDK ALRSKDGSRV CQDFVSLVQE WLQKIQTADS LGGVFGDTNK SELAAFASYA
301: LAFPSNFLAL VDTYDVMRSG IPNFCAVALA LHDLGYKASG IRLDSGDLAY LSIEARKVFH AVEKEFNVPG FAKMVITASN DLNEETIDAL NKQGHEVDAF
401: GIGTYLVTCY SQAALGCVFK LVEINNRPRI KLSEDVAKVS IPCKKRCFRL YGKEGYPLVD IMIRESEPSP KAGERILCRH PFIESKRAYV VPQHVEELLQ
501: CYWPGTSDKP RAELPSLEKI RSRCMQQLEK LRPDHIRRLN PTPYKVSVSA KLYDFIHCLW LNEAPVGELQ

Best Arabidopsis Sequence Match ( AT2G23420.1 )
(BLAST)

001: MEPKENGSEL GQKIIDGPTN PMVTPLLNDL YQFTMAYAYW KAGKHNERSV FDLYFRKNPF GGEYTVFAGL EECVKFLANF KLTDEEIDFV QECLPGSEEA
101: FCDYLRGLDC SDVEVYAIPE GSVVFPKVPL MRVEGPVGVV QLLETPFLNL VNFASLVATN AARHRFVAGK SKSLLEFGAR RAQGPDGAIS ASKYCYLGGF
201: DATSNVAAGK LFGIPLRGTH SHAYVSSFMS TDEIVDKVLR SADGKTTCED FVSHVQTWLK KIQYSPSLSG IFSETNQSEL AAFTSYALAF PKTFLALVDT
301: YDVMKSGIPN FCAVALALND FGYKALGIRL DSGDLAYLSR EARNFFCTVE RELKVPGFGK MVVTASNDLN EETIDALNKQ GHEVDAFGIG TYLVTCYSQA
401: ALGCVFKLVE INNQPRIKLS EDVTKVSIPC KKRSYRLYGK EGYPLVDIMT GENEPPPKVG ERLLCRHPFN ESKRAYVVPQ RVEELLKCYW RGSADEAREV
501: LPPLKEIRDR CIKQLENMRP DHMRRLNPTP YKVSVSAKLY DFIHFLWLNE APVGELQ

Arabidopsis Description

NAPRT2Nicotinate phosphoribosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.