CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07517

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	EES07517	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G103500.1	Wheat	plastid	67.18	68.95
TraesCS7A01G108600.1	Wheat	plastid	63.08	63.08
HORVU7Hr1G023140.1	Barley	plastid	63.08	62.44
Zm00001d006398_P001	Maize	plastid	62.56	61.31
TraesCS7B01G006600.1	Wheat	plastid	60.51	60.2
Os07t0489800-01	Rice	plastid	64.62	60.0
GSMUA_Achr11P...	Banana	plastid	55.38	57.45
CDY30147	Canola	mitochondrion	23.08	45.0
Solyc08g083360.2.1	Tomato	nucleus	42.05	42.71
CDY63822	Canola	cytosol	24.62	41.74
PGSC0003DMT400031868	Potato	plastid	42.56	41.29
AT3G16250.1	Thale cress	plastid	40.51	38.73
CDY20191	Canola	plastid	40.51	38.73
Bra021172.1-P	Field mustard	plastid	39.49	37.75
CDX97734	Canola	plastid	39.49	37.75
Bra027180.1-P	Field mustard	plastid	39.49	37.75
VIT_09s0002g04010.t01	Wine grape	plastid	36.92	37.7
KRH09910	Soybean	plastid	36.92	37.11
KRH23421	Soybean	mitochondrion, plastid	35.38	35.57
KXG22507	Sorghum	plastid	27.18	29.44
CDY30148	Canola	plastid	19.49	26.57

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	EntrezGene:8080694	InterPro:Beta-grasp_dom_sf
UniProt:C5X963	EnsemblPlants:EER97233	ProteinID:EER97233	ProteinID:EER97233.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009773	GO:GO:0009987	GO:GO:0010598	GO:GO:0015979	GO:GO:0016020
GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27
EnsemblPlantsGene:SORBI_3002G305700	SUPFAM:SSF54292	unigene:Sbi.3205	UniParc:UPI0001A83B8F	RefSeq:XP_002460712.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:68071432..68073276

Molecular Weight (calculated)

21304.8 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.399

Length

195 amino acids

Sequence
(BLAST)

001: MGATMHLTGV LGVSSPPLAP SHCSCSGAKK QSCSLRPPRR QQQQQRRRLR VARAVEVGAP SAGAPEPEQV EPPSIDFAFV SPRLLPDGTP DVHYRTACGG
101: QKLRDIMLDA YIDLYGPYDK VLLNCAGGGV CGTCLVEVVE GKEMLSPKTD VEKELLKRKP KTWRLACQAT VGNADSTGQM IIQQLPEWKI HEWDK

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.