Factsheet for Zm00001d006398_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017475_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	Zm00001d017475_P002	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021515_P001	Maize	plastid	60.3	62.83
EER97233	Sorghum	plastid	61.31	62.56
TraesCS7D01G103500.1	Wheat	plastid	58.29	61.05
TraesCS7B01G006600.1	Wheat	plastid	58.29	59.18
HORVU7Hr1G023140.1	Barley	plastid	58.29	58.88
TraesCS7A01G108600.1	Wheat	plastid	54.27	55.38
GSMUA_Achr11P...	Banana	plastid	51.76	54.79
Os07t0489800-01	Rice	plastid	55.28	52.38
Zm00001d048981_P001	Maize	cytosol	18.09	43.37
CDY30147	Canola	mitochondrion	21.61	43.0
Solyc08g083360.2.1	Tomato	nucleus	38.69	40.1
CDY63822	Canola	cytosol	23.12	40.0
PGSC0003DMT400031868	Potato	plastid	36.68	36.32
Bra027180.1-P	Field mustard	plastid	36.68	35.78
CDX97734	Canola	plastid	36.68	35.78
AT3G16250.1	Thale cress	plastid	36.18	35.29
Bra021172.1-P	Field mustard	plastid	35.68	34.8
VIT_09s0002g04010.t01	Wine grape	plastid	33.17	34.55
CDY20191	Canola	plastid	34.17	33.33
KRH09910	Soybean	plastid	32.16	32.99
KRH23421	Soybean	mitochondrion, plastid	31.66	32.47
Zm00001d027567_P001	Maize	cytosol	20.1	28.78
Zm00001d038946_P001	Maize	plastid	26.63	26.63
Zm00001d039288_P001	Maize	cytosol	18.09	25.9
CDY30148	Canola	plastid	15.58	21.68
Zm00001d041837_P001	Maize	endoplasmic reticulum, extracellular	14.07	20.44

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	UniProt:A0A1D6EVV4	InterPro:Beta-grasp_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675
ProteinID:ONM23700.1	PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	UniParc:UPI0008435AFE
EnsemblPlantsGene:Zm00001d006398	EnsemblPlants:Zm00001d006398_P001	EnsemblPlants:Zm00001d006398_T001	SEG:seg	:	:

Description

Photosynthetic NDH subunit of subcomplex B 3 chloroplastic

Coordinates

chr2:+:206591023..206592594

Molecular Weight (calculated)

21648.3 Da

IEP (calculated)

9.598

GRAVY (calculated)

-0.418

Length

199 amino acids

Sequence
(BLAST)

001: MGATVHLTVT GALGVTSPPL APSHCTCAGA KKQSCSLRSP RQQRRRLRVV EMGAPSGGEP SAGGGGGAVH RLRVRQREFL SRFPCPRLLP DGTPDVHYRT
101: ARGGQKLRDV MLDGYIDLYG PYDKVLLNCS GGGVCGTCVV EVVEGKEMLS PKTEVEKELL KRKPKTWRLA CQATVGNADS TGQMIIQQLP EWKIHEWDK

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.