Factsheet for Solyc08g083360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113740.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	Solyc03g113740.2.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031868	Potato	plastid	73.96	70.65
GSMUA_Achr11P...	Banana	plastid	44.27	45.21
EER97233	Sorghum	plastid	42.71	42.05
Zm00001d021515_P001	Maize	plastid	41.67	41.88
HORVU7Hr1G023140.1	Barley	plastid	42.71	41.62
TraesCS7D01G103500.1	Wheat	plastid	41.15	41.58
TraesCS7B01G006600.1	Wheat	plastid	41.67	40.82
TraesCS7A01G108600.1	Wheat	plastid	40.62	40.0
Zm00001d006398_P001	Maize	plastid	40.1	38.69
Os07t0489800-01	Rice	plastid	42.19	38.57
CDY30147	Canola	mitochondrion	19.27	37.0
CDY63822	Canola	cytosol	19.79	33.04
VIT_09s0002g04010.t01	Wine grape	plastid	32.81	32.98
KRH09910	Soybean	plastid	32.29	31.96
CDX97734	Canola	plastid	33.85	31.86
Bra027180.1-P	Field mustard	plastid	33.85	31.86
Bra021172.1-P	Field mustard	plastid	33.33	31.37
KRH23421	Soybean	mitochondrion, plastid	31.25	30.93
CDY20191	Canola	plastid	32.81	30.88
AT3G16250.1	Thale cress	plastid	32.29	30.39
CDY30148	Canola	plastid	16.15	21.68
Solyc08g022140.1.1	Tomato	cytosol	5.73	12.09

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	UniProt:K4CPY0
PFAM:PF00111	PFscan:PS51257	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	EnsemblPlantsGene:Solyc08g083360.2
EnsemblPlants:Solyc08g083360.2.1	UniParc:UPI000276ACF9	SEG:seg	:	:	:

Description

Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G16250) UniProtKB/Swiss-Prot;Acc:Q9LU21]

Coordinates

chr8:+:65830571..65831740

Molecular Weight (calculated)

21192.3 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.418

Length

192 amino acids

Sequence
(BLAST)

001: MRAIEIYWYG GLAASTLSQS SLSCISKVHQ RCLRTKIKAV ASSHEKEEAC VKFAFVSSVL LPDGTPDVQL RKACGGQKLR DIMLDANVEL YGPYARPLLN
101: CGGGGTCATC LVEVVEGKEL LNPRTDKENE NLKRHPNNWR LACQAIVGKP DSRGMMTIQQ LPEWKAHEWN YRGLPPNEEE EEEAASISSS SA

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.