Factsheet for Zm00001d021515_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017475_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	Zm00001d017475_P002	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G108600.1	Wheat	plastid	65.44	64.1
HORVU7Hr1G023140.1	Barley	plastid	65.97	63.96
TraesCS7B01G006600.1	Wheat	plastid	65.44	63.78
TraesCS7D01G103500.1	Wheat	plastid	61.26	61.58
Os07t0489800-01	Rice	plastid	67.02	60.95
Zm00001d006398_P001	Maize	plastid	62.83	60.3
GSMUA_Achr11P...	Banana	plastid	53.93	54.79
CDY30147	Canola	mitochondrion	23.56	45.0
Zm00001d048981_P001	Maize	cytosol	19.37	44.58
PGSC0003DMT400031868	Potato	plastid	46.6	44.28
Solyc08g083360.2.1	Tomato	nucleus	41.88	41.67
CDY63822	Canola	cytosol	24.61	40.87
VIT_09s0002g04010.t01	Wine grape	plastid	37.7	37.7
KRH09910	Soybean	plastid	38.22	37.63
AT3G16250.1	Thale cress	plastid	38.22	35.78
CDX97734	Canola	plastid	37.7	35.29
Bra027180.1-P	Field mustard	plastid	37.7	35.29
Bra021172.1-P	Field mustard	plastid	37.7	35.29
KRH23421	Soybean	mitochondrion, plastid	35.6	35.05
CDY20191	Canola	plastid	37.17	34.8
Zm00001d027567_P001	Maize	cytosol	22.51	30.94
Zm00001d039288_P001	Maize	cytosol	19.9	27.34
Zm00001d038946_P001	Maize	plastid	28.27	27.14
CDY30148	Canola	plastid	16.75	22.38
Zm00001d041837_P001	Maize	endoplasmic reticulum, extracellular	15.71	21.9

Protein Annotations

MapMan:1.1.8.1.3.3	EntrezGene:100273459	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	UniProt:B4FVP6
EMBL:BT041184	InterPro:Beta-grasp_dom_sf	EMBL:EU955658	EMBL:EU966268	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	ProteinID:ONM57365.1	PFAM:PF00111
PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	UniParc:UPI00017B7CE8	EnsemblPlantsGene:Zm00001d021515	EnsemblPlants:Zm00001d021515_P001
EnsemblPlants:Zm00001d021515_T001	SEG:seg	:	:	:	:

Description

Photosynthetic NDH subunit of subcomplex B 3 chloroplastic

Coordinates

chr7:+:154782638..154784305

Molecular Weight (calculated)

20813.0 Da

IEP (calculated)

7.753

GRAVY (calculated)

-0.420

Length

191 amino acids

Sequence
(BLAST)

001: MAATAHLTGV LGVSSPPLAP SHCSCSGAKK QSCSLRQGRQ QRRRLRVARA VEVDAPSAGA PEPEEAEEPS VDFAFVSPRL LPDGTPDVHY RTARGGQKLR
101: DIMLDGYIDL YGPYDKVLLN CSGGGVCGTC IVEVVEGKEM LSPKTDVEKE LLKRKPKTWR LACQATVGNA DSTGQMIIQQ LPEWKIHEWD K

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.