Factsheet for TraesCS7D01G103500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 28542341

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G16250.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G16250.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G023140.1	Barley	plastid	79.47	76.65
TraesCS7B01G006600.1	Wheat	plastid	73.16	70.92
TraesCS7A01G108600.1	Wheat	plastid	71.05	69.23
EER97233	Sorghum	plastid	68.95	67.18
Zm00001d021515_P001	Maize	plastid	61.58	61.26
Zm00001d006398_P001	Maize	plastid	61.05	58.29
Os07t0489800-01	Rice	plastid	63.68	57.62
GSMUA_Achr11P...	Banana	plastid	55.79	56.38
CDY30147	Canola	mitochondrion	23.16	44.0
Solyc08g083360.2.1	Tomato	nucleus	41.58	41.15
PGSC0003DMT400031868	Potato	plastid	42.63	40.3
CDY63822	Canola	cytosol	24.21	40.0
Bra021172.1-P	Field mustard	plastid	41.58	38.73
CDX97734	Canola	plastid	41.58	38.73
Bra027180.1-P	Field mustard	plastid	41.58	38.73
AT3G16250.1	Thale cress	plastid	41.05	38.24
CDY20191	Canola	plastid	40.53	37.75
VIT_09s0002g04010.t01	Wine grape	plastid	37.89	37.7
KRH09910	Soybean	plastid	38.42	37.63
KRH23421	Soybean	mitochondrion, plastid	36.32	35.57
TraesCS1D01G391000.1	Wheat	plastid	28.42	29.67
CDY30148	Canola	plastid	20.53	27.27

Protein Annotations

EnsemblPlants:TraesCS7D01G103500.1	EnsemblPlantsGene:TraesCS7D01G103500	Gene3D:3.10.20.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0009055	GO:GO:0051536	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:Beta-grasp_dom_sf	InterPro:IPR001041
InterPro:IPR012675	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	PFAM:PF00111	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF54292	TIGR:cd00207	MapMan:1.1.8.1.3.3	:	:	:

Description

No Description!

Coordinates

chr7D:-:63381267..63382798

Molecular Weight (calculated)

20801.8 Da

IEP (calculated)

7.424

GRAVY (calculated)

-0.510

Length

190 amino acids

Sequence
(BLAST)

001: MAATLQFISL LGTSSAHPAP SCSSSNEKQH RSVHLPQQQQ GRRLRAVRAV ETGAEPATAD SETTVEPPSV DFAFVSPRLL PDGTPDVHYR TACGGQKLRD
101: IMLQGYIDLY GPYDKLLLNC SGGGECGTCI VEVVEGGEML SPKNEVEKEK LKRKPKSWRL ACQATVGNPD STGQMVIQQL PEWKVHKWDK

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.