CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH29310
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	KRH24006	AT3G48150.1	21798944
AT3G16250.1	KRH27971	AT3G48150.1	21798944
AT3G16250.1	KRH29310	AT3G48150.1	21798944
AT3G16250.1	KRH77487	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09910	Soybean	plastid	83.51	83.51
CDY63822	Canola	cytosol	37.63	63.48
VIT_09s0002g04010.t01	Wine grape	plastid	60.82	61.78
Bra021172.1-P	Field mustard	plastid	56.19	53.43
AT3G16250.1	Thale cress	plastid	55.67	52.94
CDY30147	Canola	mitochondrion	26.8	52.0
CDY20191	Canola	plastid	54.64	51.96
Bra027180.1-P	Field mustard	plastid	54.12	51.47
CDX97734	Canola	plastid	54.12	51.47
CDY30148	Canola	plastid	30.41	41.26
GSMUA_Achr11P...	Banana	plastid	36.6	37.77
TraesCS7D01G103500.1	Wheat	plastid	35.57	36.32
HORVU7Hr1G023140.1	Barley	plastid	36.6	36.04
Zm00001d021515_P001	Maize	plastid	35.05	35.6
TraesCS7A01G108600.1	Wheat	plastid	35.57	35.38
EER97233	Sorghum	plastid	35.57	35.38
Os07t0489800-01	Rice	plastid	37.11	34.29
TraesCS7B01G006600.1	Wheat	plastid	34.54	34.18
KRH16041	Soybean	plastid	25.26	33.11
PGSC0003DMT400031868	Potato	plastid	34.02	32.84
Zm00001d006398_P001	Maize	plastid	32.47	31.66
Solyc08g083360.2.1	Tomato	nucleus	30.93	31.25
KRH05069	Soybean	plastid	25.77	31.06

Protein Annotations

MapMan:1.1.8.1.3.3	EntrezGene:100500287	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	EMBL:ACUP02008465
EMBL:BT091201	InterPro:Beta-grasp_dom_sf	UniProt:C6T195	EnsemblPlantsGene:GLYMA_13G356100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	EnsemblPlants:KRH23421	ProteinID:KRH23421
ProteinID:KRH23421.1	PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	UniParc:UPI0001B157B5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:44445777..44447794

Molecular Weight (calculated)

21632.9 Da

IEP (calculated)

8.711

GRAVY (calculated)

-0.570

Length

194 amino acids

Sequence
(BLAST)

001: MSLLQLQLTS HALRSVSSHN FRPLYSSKRV SYVRTKIRAV GTVPDEKDSD SDITTDPDEP PYVGLVFVSS VLLPDGTPDM HFRSACGGQR LRKIMLDSNV
101: DLYGPYARPL LNCGGGGTCG TCMVEVLEGK ELLNPRTDKE KKILKKKPKN WRLACQTTVG KPDSRGAVVI QQLPEWKGHE WKYAKPGESD WESE

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.