Factsheet for HORVU7Hr1G023140.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G027080.4
HORVU6Hr1G062870.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	HORVU0Hr1G027080.4	AT3G48150.1	21798944
AT3G16250.1	HORVU6Hr1G062870.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G103500.1	Wheat	plastid	76.65	79.47
TraesCS7A01G108600.1	Wheat	plastid	74.11	74.87
TraesCS7B01G006600.1	Wheat	plastid	71.57	71.94
Zm00001d021515_P001	Maize	plastid	63.96	65.97
EER97233	Sorghum	plastid	62.44	63.08
Os07t0489800-01	Rice	plastid	63.96	60.0
Zm00001d006398_P001	Maize	plastid	58.88	58.29
GSMUA_Achr11P...	Banana	plastid	52.79	55.32
CDY30147	Canola	mitochondrion	22.34	44.0
PGSC0003DMT400031868	Potato	plastid	43.65	42.79
Solyc08g083360.2.1	Tomato	nucleus	41.62	42.71
CDY63822	Canola	cytosol	23.35	40.0
Bra027180.1-P	Field mustard	plastid	41.12	39.71
HORVU2Hr1G042420.1	Barley	cytosol	25.89	39.53
CDX97734	Canola	plastid	40.61	39.22
VIT_09s0002g04010.t01	Wine grape	plastid	37.56	38.74
Bra021172.1-P	Field mustard	plastid	40.1	38.73
KRH09910	Soybean	plastid	38.07	38.66
AT3G16250.1	Thale cress	plastid	39.59	38.24
CDY20191	Canola	plastid	38.07	36.76
KRH23421	Soybean	mitochondrion, plastid	36.04	36.6
CDY30148	Canola	plastid	18.78	25.87
HORVU1Hr1G084520.15	Barley	nucleus	20.81	18.39

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	UniProt:A0A287VPX4	InterPro:Beta-grasp_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009773	GO:GO:0009987	GO:GO:0010598
GO:GO:0015979	GO:GO:0016020	GO:GO:0022900	GO:GO:0051536	EnsemblPlantsGene:HORVU7Hr1G023140	EnsemblPlants:HORVU7Hr1G023140.1
InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292
SignalP:SignalP-noTM	UniParc:UPI000B476345	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:34820156..34821987

Molecular Weight (calculated)

21526.6 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.518

Length

197 amino acids

Sequence
(BLAST)

001: MAATLQFVSL LGTTSAHPAP SSCSSSSSSS EKHHRSVHLP QQRQPSRRRR LRAVRAVETD APAAAADSEA TVEPPSVDFA FVSPRLLPDG TPDVHYRTAC
101: GGQKLRDIML DGYIDLYGPY DKLLLNCSGG GECGTCIVEV VEGGEMLSPK NEVEKEKLKR KPKSWRLACQ ATVGNPDSTG QMVIQQLPEW KVHKWDK

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.