Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 5
- nucleus 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16250.1 | CDY36901 | AT3G48150.1 | 21798944 |
| AT3G16250.1 | CDY44976 | AT3G48150.1 | 21798944 |
| AT3G16250.1 | CDY58069 | AT3G48150.1 | 21798944 |
| AT3G16250.1 | CDY58070 | AT3G48150.1 | 21798944 |
| AT3G16250.1 | CDY70805 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63822 | Canola | cytosol | 43.0 | 37.39 |
| AT3G16250.1 | Thale cress | plastid | 73.0 | 35.78 |
| CDX97734 | Canola | plastid | 71.0 | 34.8 |
| CDY20191 | Canola | plastid | 67.0 | 32.84 |
| KRH23421 | Soybean | mitochondrion, plastid | 52.0 | 26.8 |
| VIT_09s0002g04010.t01 | Wine grape | plastid | 51.0 | 26.7 |
| KRH09910 | Soybean | plastid | 51.0 | 26.29 |
| Zm00001d021515_P001 | Maize | plastid | 45.0 | 23.56 |
| GSMUA_Achr11P... | Banana | plastid | 44.0 | 23.4 |
| TraesCS7D01G103500.1 | Wheat | plastid | 44.0 | 23.16 |
| EER97233 | Sorghum | plastid | 45.0 | 23.08 |
| CDX68864 | Canola | plastid | 38.0 | 22.89 |
| TraesCS7A01G108600.1 | Wheat | plastid | 44.0 | 22.56 |
| CDX75257 | Canola | plastid | 38.0 | 22.49 |
| TraesCS7B01G006600.1 | Wheat | plastid | 44.0 | 22.45 |
| Os07t0489800-01 | Rice | plastid | 47.0 | 22.38 |
| HORVU7Hr1G023140.1 | Barley | plastid | 44.0 | 22.34 |
| Zm00001d006398_P001 | Maize | plastid | 43.0 | 21.61 |
| Solyc08g083360.2.1 | Tomato | nucleus | 37.0 | 19.27 |
| PGSC0003DMT400031868 | Potato | plastid | 37.0 | 18.41 |
| CDY30148 | Canola | plastid | 5.0 | 3.5 |
Protein Annotations
| EnsemblPlants:CDY30147 | EnsemblPlantsGene:GSBRNA2T00044725001 | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf | InterPro:IPR012675 | PANTHER:PTHR23426 |
| PANTHER:PTHR23426:SF27 | ProteinID:CDY30147 | ProteinID:CDY30147.1 | UniParc:UPI0004EEF08C | UniProt:A0A078GY44 | MapMan:35.1 |
Description
BnaC05g37150DBnaC05g37150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY44]
Coordinates
chrLK032249:-:355500..356482
Molecular Weight (calculated)
11907.3 Da
IEP (calculated)
10.605
GRAVY (calculated)
-1.030
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MVRKLWGVYR WWQAERDHGT RLLRRRAQIV NGKELLNPRT DIEKEKLKRK PKNWRLACQT NVGNPDSTGL VVIQQLPEWK AHEWNIPRNL PIDDDPETST
001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST
Arabidopsis Description
PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.