CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	CDY36901	AT3G48150.1	21798944
AT3G16250.1	CDY44976	AT3G48150.1	21798944
AT3G16250.1	CDY58069	AT3G48150.1	21798944
AT3G16250.1	CDY58070	AT3G48150.1	21798944
AT3G16250.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021172.1-P	Field mustard	plastid	87.25	87.25
CDY30148	Canola	plastid	59.8	85.31
CDY63822	Canola	cytosol	46.08	81.74
CDX97734	Canola	plastid	81.37	81.37
AT3G16250.1	Thale cress	plastid	75.98	75.98
CDY30147	Canola	mitochondrion	32.84	67.0
VIT_09s0002g04010.t01	Wine grape	plastid	54.41	58.12
KRH09910	Soybean	plastid	51.96	54.64
KRH23421	Soybean	mitochondrion, plastid	51.96	54.64
TraesCS7D01G103500.1	Wheat	plastid	37.75	40.53
EER97233	Sorghum	plastid	38.73	40.51
GSMUA_Achr11P...	Banana	plastid	36.76	39.89
TraesCS7B01G006600.1	Wheat	plastid	36.76	38.27
HORVU7Hr1G023140.1	Barley	plastid	36.76	38.07
TraesCS7A01G108600.1	Wheat	plastid	36.27	37.95
Zm00001d021515_P001	Maize	plastid	34.8	37.17
Os07t0489800-01	Rice	plastid	37.25	36.19
Zm00001d006398_P001	Maize	plastid	33.33	34.17
CDX68864	Canola	plastid	27.45	33.73
Solyc08g083360.2.1	Tomato	nucleus	30.88	32.81
CDX75257	Canola	plastid	25.49	30.77
PGSC0003DMT400031868	Potato	plastid	29.9	30.35

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	GO:A0A078G484	UniProt:A0A078G484
InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY20191	ProteinID:CDY20191	ProteinID:CDY20191.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0022900	GO:GO:0051536	EnsemblPlantsGene:GSBRNA2T00010065001	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111
PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	UniParc:UPI0004EE5ABA	:	:

Description

BnaA01g28110DBnaA01g28110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G484]

Coordinates

chrLK032103:-:641861..643336

Molecular Weight (calculated)

22339.5 Da

IEP (calculated)

7.909

GRAVY (calculated)

-0.480

Length

204 amino acids

Sequence
(BLAST)

001: MGSVQLNGSG LVASLSQNHI FSHKTKLSNP ESSFLRSKHN ASRAKTIRAI STAPASQPPV ADEPNDEPPA MDFAFVHSVL LPDGTPDVHW RRACGGQKLR
101: DIMLDSNIEL YGPYSKPLSN CAGVGTCATC MVEIVNGKEL LNPRTDIEKE KLKRKPKNWR LACQTNVGYP DSTGLVVIQQ LPEWKAHEWN IPKNVAIDDP
201: DSSA

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.