Factsheet for AT3G16250.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021172.1-P	Field mustard	plastid	87.75	87.75
Bra027180.1-P	Field mustard	plastid	86.76	86.76
CDX97734	Canola	plastid	86.76	86.76
CDY63822	Canola	cytosol	46.08	81.74
CDY20191	Canola	plastid	75.98	75.98
CDY30147	Canola	mitochondrion	35.78	73.0
CDY30148	Canola	plastid	44.61	63.64
VIT_09s0002g04010.t01	Wine grape	plastid	53.43	57.07
KRH23421	Soybean	mitochondrion, plastid	52.94	55.67
KRH09910	Soybean	plastid	51.96	54.64
TraesCS7D01G103500.1	Wheat	plastid	38.24	41.05
EER97233	Sorghum	plastid	38.73	40.51
TraesCS7A01G108600.1	Wheat	plastid	38.24	40.0
HORVU7Hr1G023140.1	Barley	plastid	38.24	39.59
GSMUA_Achr11P...	Banana	plastid	35.29	38.3
Zm00001d021515_P001	Maize	plastid	35.78	38.22
TraesCS7B01G006600.1	Wheat	plastid	36.27	37.76
Os07t0489800-01	Rice	plastid	38.24	37.14
Zm00001d006398_P001	Maize	plastid	35.29	36.18
Solyc08g083360.2.1	Tomato	nucleus	30.39	32.29
PGSC0003DMT400031868	Potato	plastid	30.39	30.85
AT4G32590.3	Thale cress	plastid	24.02	27.22

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	EntrezGene:820871	ProteinID:AEE75790.1
ArrayExpress:AT3G16250	EnsemblPlantsGene:AT3G16250	RefSeq:AT3G16250	TAIR:AT3G16250	RefSeq:AT3G16250-TAIR-G	EnsemblPlants:AT3G16250.1
TAIR:AT3G16250.1	EMBL:AY042867	Unigene:At.6081	ProteinID:BAB01265.1	EMBL:BT006260	InterPro:Beta-grasp_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009773	GO:GO:0009987	GO:GO:0010598
GO:GO:0015979	GO:GO:0016020	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
InterPro:IPR001041	InterPro:IPR012675	Symbol:NDF4	RefSeq:NP_188246.1	PFAM:PF00111	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27
UniProt:Q9LU21	SUPFAM:SSF54292	UniParc:UPI00000A5787	SEG:seg	:	:

Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]

Coordinates

chr3:-:5506931..5508414

Molecular Weight (calculated)

22419.5 Da

IEP (calculated)

8.338

GRAVY (calculated)

-0.592

Length

204 amino acids

Sequence
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.