Factsheet for Bra021172.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018081.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	Bra018081.1-P	AT3G48150.1	21798944
AT3G16250.1	Bra033769.1-P	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027180.1-P	Field mustard	plastid	91.67	91.67
AT3G16250.1	Thale cress	plastid	87.75	87.75
CDY20191	Canola	plastid	87.25	87.25
CDY63822	Canola	cytosol	46.57	82.61
CDY30148	Canola	plastid	49.02	69.93
VIT_09s0002g04010.t01	Wine grape	plastid	54.9	58.64
KRH23421	Soybean	mitochondrion, plastid	53.43	56.19
KRH09910	Soybean	plastid	52.94	55.67
TraesCS7D01G103500.1	Wheat	plastid	38.73	41.58
HORVU7Hr1G023140.1	Barley	plastid	38.73	40.1
TraesCS7B01G006600.1	Wheat	plastid	38.24	39.8
EER97233	Sorghum	plastid	37.75	39.49
TraesCS7A01G108600.1	Wheat	plastid	37.75	39.49
GSMUA_Achr11P...	Banana	plastid	36.27	39.36
Zm00001d021515_P001	Maize	plastid	35.29	37.7
Os07t0489800-01	Rice	plastid	38.24	37.14
Zm00001d006398_P001	Maize	plastid	34.8	35.68
Solyc08g083360.2.1	Tomato	nucleus	31.37	33.33
Bra011358.1-P	Field mustard	plastid	27.45	33.14
PGSC0003DMT400031868	Potato	plastid	30.88	31.34

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf	EnsemblPlantsGene:Bra021172
EnsemblPlants:Bra021172.1	EnsemblPlants:Bra021172.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536
InterPro:IPR001041	InterPro:IPR012675	UniProt:M4DXC6	PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27
SUPFAM:SSF54292	UniParc:UPI0002543BC9	:	:	:	:

Description

AT3G16250 (E=2e-104) NDF4 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding

Coordinates

chrA01:+:23593263..23594631

Molecular Weight (calculated)

22258.4 Da

IEP (calculated)

7.912

GRAVY (calculated)

-0.480

Length

204 amino acids

Sequence
(BLAST)

001: MGSVQLNGSG LVASLSQNHI FSHKTKLSNP ESSFLRSKHN ASRAKTIRAI STAPASQPPV ADEPNDEPPA VDFAFVHSVL LPDGTPDVHW RRACGGQKLR
101: DIMLDSNIEL YGPYSKPLSN CAGVGTCATC MVEIVNGKEL LNPRTDIEKE KLKRKPKNWR LACQTNVGNP DSTGLVVIQQ LPEWKAHEWN IPKNVAIDDP
201: DSSA

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.