Factsheet for PGSC0003DMT400031868

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063189

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	PGSC0003DMT400063189	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083360.2.1	Tomato	nucleus	70.65	73.96
Zm00001d021515_P001	Maize	plastid	44.28	46.6
GSMUA_Achr11P...	Banana	plastid	42.79	45.74
HORVU7Hr1G023140.1	Barley	plastid	42.79	43.65
TraesCS7A01G108600.1	Wheat	plastid	42.29	43.59
TraesCS7D01G103500.1	Wheat	plastid	40.3	42.63
EER97233	Sorghum	plastid	41.29	42.56
TraesCS7B01G006600.1	Wheat	plastid	40.3	41.33
Os07t0489800-01	Rice	plastid	41.29	39.52
CDY30147	Canola	mitochondrion	18.41	37.0
Zm00001d006398_P001	Maize	plastid	36.32	36.68
VIT_09s0002g04010.t01	Wine grape	plastid	34.83	36.65
KRH09910	Soybean	plastid	33.33	34.54
KRH23421	Soybean	mitochondrion, plastid	32.84	34.02
CDY63822	Canola	cytosol	18.91	33.04
CDX97734	Canola	plastid	31.34	30.88
Bra027180.1-P	Field mustard	plastid	31.34	30.88
Bra021172.1-P	Field mustard	plastid	31.34	30.88
AT3G16250.1	Thale cress	plastid	30.85	30.39
CDY20191	Canola	plastid	30.35	29.9
PGSC0003DMT400003234	Potato	cytosol, mitochondrion	18.91	24.36
CDY30148	Canola	plastid	14.43	20.28

Protein Annotations

MapMan:1.1.8.1.3.3	EntrezGene:102582039	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675
UniProt:M1AWD9	PFAM:PF00111	EnsemblPlantsGene:PGSC0003DMG400012224	PGSC:PGSC0003DMG400012224	EnsemblPlants:PGSC0003DMT400031868	PANTHER:PTHR23426
PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	UniParc:UPI000296B2D8	RefSeq:XP_006343759.1	SEG:seg	:

Description

Electron carrier [Source:PGSC_GENE;Acc:PGSC0003DMG400012224]

Coordinates

chr8:+:56805297..56806504

Molecular Weight (calculated)

22171.4 Da

IEP (calculated)

7.986

GRAVY (calculated)

-0.421

Length

201 amino acids

Sequence
(BLAST)

001: MKAIEIYWYG GLAASTLSQS SSCISKVHQR CLRFNRTKIK AVASSERSRE AVAHEEEEAC VKFAFVSSVF LPDGTPDVQL RKACGGQKLR DIMLDANVEL
101: YGPYARPLLN CGGGGTCATC LVEVVEGKEL LNPRTDKENE NLKRHPKNWR LACQAIVGKP DSRGMMTIQQ LPEWKAHEWN YRGLPPNEEE AAAASISSSS
201: A

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.