Factsheet for PGSC0003DMT400003234

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048981_P001	Maize	cytosol	46.15	86.75
Solyc08g022140.1.1	Tomato	cytosol	42.95	73.63
HORVU2Hr1G042420.1	Barley	cytosol	55.77	67.44
KRH16041	Soybean	plastid	63.46	66.89
KRH05069	Soybean	plastid	67.31	65.22
VIT_04s0008g04240.t01	Wine grape	extracellular	69.87	63.37
Bra011358.1-P	Field mustard	plastid	64.1	59.17
CDX75257	Canola	plastid	64.1	59.17
CDX68864	Canola	plastid	62.82	59.04
GSMUA_Achr1P14520_001	Banana	plastid	66.67	56.52
KXG22507	Sorghum	plastid	64.74	56.11
TraesCS1A01G383200.1	Wheat	plastid	61.54	53.33
TraesCS1D01G391000.1	Wheat	plastid	61.54	52.75
AT4G32590.3	Thale cress	plastid	58.33	50.56
Zm00001d038946_P001	Maize	plastid	60.26	47.24
Zm00001d027567_P001	Maize	cytosol	39.74	44.6
Os05t0555300-01	Rice	plastid	58.97	43.81
TraesCS1B01G409300.1	Wheat	plastid	53.85	43.52
Zm00001d039288_P001	Maize	cytosol	38.46	43.17
Zm00001d041837_P001	Maize	endoplasmic reticulum, extracellular	27.56	31.39
HORVU1Hr1G084520.15	Barley	nucleus	40.38	28.25
PGSC0003DMT400031868	Potato	plastid	24.36	18.91

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	InterPro:Beta-grasp_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	UniProt:M0ZLA5
PFAM:PF00111	EnsemblPlantsGene:PGSC0003DMG400001278	PGSC:PGSC0003DMG400001278	EnsemblPlants:PGSC0003DMT400003234	PANTHER:PTHR23426	PANTHER:PTHR23426:SF32
SUPFAM:SSF54292	UniParc:UPI0002953DEC	:	:	:	:

Description

Electron carrier [Source:PGSC_GENE;Acc:PGSC0003DMG400001278]

Coordinates

chr00:+:31496648..31502822

Molecular Weight (calculated)

17677.6 Da

IEP (calculated)

9.925

GRAVY (calculated)

-0.581

Length

156 amino acids

Sequence
(BLAST)

001: MAARITFRPP EFTKKHHKPL ITLTKRIPTC IYCTTTTKPE IELEFIGPKP DENGNYPMDK TKAVSGEKLL RNIMSENKIE LYAAYGKVMN CGGGGSCGTC
101: IVEIIQGKDV LNERTNTELR YLKKKPESWR LACQTIVGNK ENSGKVVVQR FPQWKK

Best Arabidopsis Sequence Match ( AT4G32590.1 )
(BLAST)

001: MASLGFNLGF TFSNAQIQQH RKVSGGGRAR VISCNSSSSS SSQASSPQGI SAVTPLEIEL EFFGPKPGSD GSYPVDKAKA VSGDKLLRSI MQDNKIELYA
101: AYGKVMNCGG GGSCGTCIVE ILDGRDLLNE RTDTENRYLK KKPESWRLAC QTIVGNKENS GKVVVQRIPQ WKK

Arabidopsis Description

2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JUE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.