Factsheet for VIT_04s0008g04240.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 26106900

msms PMID: 26106900 doi

C Guillier, M Gamm, G Lucchi, C Truntzer, D Pecqueur, P Ducoroy, M Adrian, MC Héloir

Clinical Innovation Proteomic Platform - CLIPP, 15 Boulevard Maréchal de Lattre de Tassigny, BP37013, F-21070 Dijon cedex, France., CNRS, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;, Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048981_P001	Maize	cytosol	41.86	86.75
HORVU2Hr1G042420.1	Barley	cytosol	55.23	73.64
KRH05069	Soybean	plastid	67.44	72.05
KRH16041	Soybean	plastid	61.05	70.95
PGSC0003DMT400003234	Potato	cytosol, mitochondrion	63.37	69.87
CDX68864	Canola	plastid	61.63	63.86
GSMUA_Achr1P14520_001	Banana	plastid	65.7	61.41
Bra011358.1-P	Field mustard	plastid	59.88	60.95
CDX75257	Canola	plastid	59.88	60.95
TraesCS1D01G391000.1	Wheat	plastid	62.79	59.34
KXG22507	Sorghum	plastid	61.63	58.89
TraesCS1A01G383200.1	Wheat	plastid	61.63	58.89
AT4G32590.3	Thale cress	plastid	57.56	55.0
Zm00001d038946_P001	Maize	plastid	57.56	49.75
TraesCS1B01G409300.1	Wheat	plastid	53.49	47.67
Os05t0555300-01	Rice	plastid	56.98	46.67
Zm00001d027567_P001	Maize	cytosol	36.63	45.32
Zm00001d039288_P001	Maize	cytosol	36.63	45.32
Solyc08g022140.1.1	Tomato	cytosol	20.93	39.56
Zm00001d041837_P001	Maize	endoplasmic reticulum, extracellular	26.16	32.85
HORVU1Hr1G084520.15	Barley	nucleus	40.7	31.39
VIT_09s0002g04010.t01	Wine grape	plastid	33.14	29.84

Protein Annotations

EntrezGene:100250753	wikigene:100250753	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1
InterPro:Beta-grasp_dom_sf	ProteinID:CCB46745	ProteinID:CCB46745.1	UniProt:F6H3F7	EMBL:FN595231	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	EntrezGene:LOC100250753
wikigene:LOC100250753	PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF32	SUPFAM:SSF54292	TIGR:TC69939
UniParc:UPI0001982FBE	ArrayExpress:VIT_04s0008g04240	EnsemblPlantsGene:VIT_04s0008g04240	EnsemblPlants:VIT_04s0008g04240.t01	unigene:Vvi.9060	RefSeq:XP_002281853
RefSeq:XP_002281853.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:3609250..3613205

Molecular Weight (calculated)

18943.0 Da

IEP (calculated)

9.696

GRAVY (calculated)

-0.449

Length

172 amino acids

Sequence
(BLAST)

001: MAALNFTAIS LRPPEKSYVT GNHRNPISFL PGRRPMKIAA AANSVESSPT VPEKPEIELE FIGEKPGSDG SFPVERAKAV SGEKLLRNIM LDNKIELYAP
101: YGKLMNCGGG GSCGTCIVEI IDGKDLLNER TNTELRYLKK KPESWRLACQ TIVGNKENSG KVVVQRLPQW KK

Best Arabidopsis Sequence Match ( AT4G32590.1 )
(BLAST)

001: MASLGFNLGF TFSNAQIQQH RKVSGGGRAR VISCNSSSSS SSQASSPQGI SAVTPLEIEL EFFGPKPGSD GSYPVDKAKA VSGDKLLRSI MQDNKIELYA
101: AYGKVMNCGG GGSCGTCIVE ILDGRDLLNE RTDTENRYLK KKPESWRLAC QTIVGNKENS GKVVVQRIPQ WKK

Arabidopsis Description

2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JUE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.