Factsheet for GSMUA_Achr11P04670_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	GSMUA_Achr11P...	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G103500.1	Wheat	plastid	56.38	55.79
EER97233	Sorghum	plastid	57.45	55.38
Zm00001d021515_P001	Maize	plastid	54.79	53.93
TraesCS7B01G006600.1	Wheat	plastid	55.85	53.57
HORVU7Hr1G023140.1	Barley	plastid	55.32	52.79
TraesCS7A01G108600.1	Wheat	plastid	53.72	51.79
Zm00001d006398_P001	Maize	plastid	54.79	51.76
Os07t0489800-01	Rice	plastid	55.32	49.52
Solyc08g083360.2.1	Tomato	nucleus	45.21	44.27
CDY30147	Canola	mitochondrion	23.4	44.0
VIT_09s0002g04010.t01	Wine grape	plastid	43.62	42.93
PGSC0003DMT400031868	Potato	plastid	45.74	42.79
CDY63822	Canola	cytosol	25.53	41.74
KRH09910	Soybean	plastid	39.36	38.14
CDY20191	Canola	plastid	39.89	36.76
KRH23421	Soybean	mitochondrion, plastid	37.77	36.6
CDX97734	Canola	plastid	39.36	36.27
Bra027180.1-P	Field mustard	plastid	39.36	36.27
Bra021172.1-P	Field mustard	plastid	39.36	36.27
AT3G16250.1	Thale cress	plastid	38.3	35.29
GSMUA_Achr1P14520_001	Banana	plastid	29.26	29.89
CDY30148	Canola	plastid	19.68	25.87

Protein Annotations

MapMan:1.1.8.1.3.3	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009773	GO:GO:0009987	GO:GO:0010598	GO:GO:0015979
GO:GO:0016020	GO:GO:0051536	EnsemblPlantsGene:GSMUA_Achr11G04670_001	EnsemblPlants:GSMUA_Achr11P04670_001	EnsemblPlants:GSMUA_Achr11T04670_001	InterPro:IPR001041
InterPro:IPR012675	UniProt:M0RPE7	PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292
UniParc:UPI000295BB26	SEG:seg	:	:	:	:

Description

Putative 2Fe-2S ferredoxin [Source:GMGC_GENE;Acc:GSMUA_Achr11G04670_001]

Coordinates

chr11:-:3512768..3514029

Molecular Weight (calculated)

20743.8 Da

IEP (calculated)

7.247

GRAVY (calculated)

-0.436

Length

188 amino acids

Sequence
(BLAST)

001: MGLLQFNSPG ISSIPITSSF NYNSKSLRPL HLPNQVSLER RKLFAISTNT TSGGSESADV ASEEPPSIDF AFVNSKLLPD GTPDVQYRSA CGGQKLRDIM
101: LDNNIDLYGP YDGPLLNCSG GGTCGTCIVE VVEGKEILSL RTDKEKELLK KKPKTWRLAC QTMVGNKDSR GQIIIQQLPE WKVHEWEK

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.