CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	CDY36901	AT3G48150.1	21798944
AT3G16250.1	CDY44976	AT3G48150.1	21798944
AT3G16250.1	CDY58069	AT3G48150.1	21798944
AT3G16250.1	CDY58070	AT3G48150.1	21798944
AT3G16250.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20191	Canola	plastid	85.31	59.8
CDX97734	Canola	plastid	74.13	51.96
Bra021172.1-P	Field mustard	plastid	69.93	49.02
CDY63822	Canola	cytosol	38.46	47.83
AT3G16250.1	Thale cress	plastid	63.64	44.61
VIT_09s0002g04010.t01	Wine grape	plastid	45.45	34.03
KRH09910	Soybean	plastid	41.26	30.41
KRH23421	Soybean	mitochondrion, plastid	41.26	30.41
TraesCS7D01G103500.1	Wheat	plastid	27.27	20.53
GSMUA_Achr11P...	Banana	plastid	25.87	19.68
EER97233	Sorghum	plastid	26.57	19.49
TraesCS7A01G108600.1	Wheat	plastid	25.87	18.97
TraesCS7B01G006600.1	Wheat	plastid	25.87	18.88
HORVU7Hr1G023140.1	Barley	plastid	25.87	18.78
Zm00001d021515_P001	Maize	plastid	22.38	16.75
Os07t0489800-01	Rice	plastid	24.48	16.67
Solyc08g083360.2.1	Tomato	nucleus	21.68	16.15
CDX68864	Canola	plastid	18.18	15.66
Zm00001d006398_P001	Maize	plastid	21.68	15.58
PGSC0003DMT400031868	Potato	plastid	20.28	14.43
CDX75257	Canola	plastid	16.08	13.61
CDY30147	Canola	mitochondrion	3.5	5.0

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	Gene3D:3.10.20.30	MapMan:35.1	GO:A0A078GZY8	UniProt:A0A078GZY8	InterPro:Beta-grasp_dom_sf
EnsemblPlants:CDY30148	ProteinID:CDY30148	ProteinID:CDY30148.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900
GO:GO:0051536	EnsemblPlantsGene:GSBRNA2T00044727001	InterPro:IPR012675	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292
UniParc:UPI0004EE1CC5	SEG:seg	:	:	:	:

Description

BnaC05g37140DBnaC05g37140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZY8]

Coordinates

chrLK032249:-:362481..363325

Molecular Weight (calculated)

15520.7 Da

IEP (calculated)

8.326

GRAVY (calculated)

-0.038

Length

143 amino acids

Sequence
(BLAST)

001: MGSVQLNGSG LVASLSPTHI FSHKTKLINA KSSFLRSKHN ATRAKTIRAI NTAPASQPPV AAEPDDEPPA VDFAFVHSVL LPDGTPDVHW RRACGGQKLR
101: DIMLDTNIEL YGPYSKPLSN CAGVGTCATC MVEVYIYLYL YLM

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.