Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70805 | Canola | nucleus | 57.98 | 95.35 |
| CDY36901 | Canola | cytosol | 88.69 | 87.62 |
| Bra033769.1-P | Field mustard | nucleus | 99.6 | 85.29 |
| CDY44976 | Canola | cytosol | 86.46 | 84.75 |
| AT3G48150.1 | Thale cress | cytosol | 90.1 | 77.03 |
| CDY58069 | Canola | nucleus | 64.65 | 71.75 |
| VIT_07s0130g00490.t01 | Wine grape | cytosol | 77.37 | 66.38 |
| VIT_07s0031g02330.t01 | Wine grape | cytosol | 76.16 | 65.34 |
| Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 75.35 | 64.76 |
| PGSC0003DMT400063189 | Potato | cytosol | 70.71 | 64.34 |
| KRH27971 | Soybean | nucleus | 74.34 | 63.78 |
| KRH77487 | Soybean | nucleus | 73.33 | 62.8 |
| KRH24006 | Soybean | cytosol | 72.93 | 61.29 |
| KRH29310 | Soybean | cytosol | 36.97 | 57.19 |
| GSMUA_Achr11P... | Banana | cytosol | 65.45 | 53.64 |
| EES07517 | Sorghum | cytosol | 63.84 | 52.67 |
| Os06t0679100-00 | Rice | plastid | 18.79 | 52.25 |
| TraesCS6A01G251400.1 | Wheat | cytosol | 63.03 | 52.09 |
| TraesCS6B01G273900.1 | Wheat | cytosol | 63.03 | 52.09 |
| TraesCS6D01G233200.1 | Wheat | cytosol | 63.03 | 52.09 |
| Zm00001d017475_P002 | Maize | cytosol | 62.83 | 51.92 |
| Os02t0656300-01 | Rice | cytosol | 62.42 | 51.76 |
| HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 63.03 | 48.07 |
| HORVU0Hr1G027080.4 | Barley | plastid | 56.57 | 46.67 |
| CDY35917 | Canola | cytosol | 15.56 | 10.36 |
| CDY40468 | Canola | cytosol | 15.56 | 10.35 |
| CDX97740 | Canola | cytosol | 14.55 | 10.1 |
| CDY30158 | Canola | cytosol | 14.55 | 10.08 |
| CDY35918 | Canola | cytosol | 3.64 | 7.26 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:A0A078J378 | UniProt:A0A078J378 | InterPro:APC8 | EnsemblPlants:CDY58070 |
| ProteinID:CDY58070 | ProteinID:CDY58070.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030071 | EnsemblPlantsGene:GSBRNA2T00023052001 | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF04049 | PFAM:PF13176 | PFscan:PS50005 | PFscan:PS50293 |
| PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_repeat | UniPathway:UPA00143 | UniParc:UPI0004EEABEC | SEG:seg | : | : |
Description
BnaAnng14950DBnaAnng14950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J378]
Coordinates
chrLK033632:+:18293..20731
Molecular Weight (calculated)
57087.8 Da
IEP (calculated)
5.134
GRAVY (calculated)
-0.441
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKESCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD SSNFTPSNTR FQRGSSSIRR RFSTISTPQP SAGFSQPPAT PLPQEEDEVI DGDLYLLAKS
101: YFDCREYRRA SHVLRDQMSN KSLFLRCYAL YLAGEKRKEE EMIELEGPLG KSDAINRELV SLERELSALK RTGAIDSFGL YLYGVVLKEK GNESLARASL
201: VESVNSYPWN WSAWSELQSL CTSIEILNSL NLNSHWMKEF FLGSAYQELR MHSESLAKYE YLQGIFSFSN YIQAQTAKAQ YSLREFDQVE IMFEDLLRND
301: PYRVEDMDLY SNVLAVDVNP CDYRAWYGLG QAYEMMGMPF YALHYFRKSI FFLPNDSRLW IAMAKCYQSE QLHMLEEAIK CYKRAVNCGD TEGIALNQLA
401: KLHQKLGRNE EAAFYFEKDL ERMDAEGLEG PNMFEALVFL ATHLKTNKKF DEAEVYCTRL LDYSGPEKEK AKSLLRGIRM AQTDFPSMDM EHFPL
101: YFDCREYRRA SHVLRDQMSN KSLFLRCYAL YLAGEKRKEE EMIELEGPLG KSDAINRELV SLERELSALK RTGAIDSFGL YLYGVVLKEK GNESLARASL
201: VESVNSYPWN WSAWSELQSL CTSIEILNSL NLNSHWMKEF FLGSAYQELR MHSESLAKYE YLQGIFSFSN YIQAQTAKAQ YSLREFDQVE IMFEDLLRND
301: PYRVEDMDLY SNVLAVDVNP CDYRAWYGLG QAYEMMGMPF YALHYFRKSI FFLPNDSRLW IAMAKCYQSE QLHMLEEAIK CYKRAVNCGD TEGIALNQLA
401: KLHQKLGRNE EAAFYFEKDL ERMDAEGLEG PNMFEALVFL ATHLKTNKKF DEAEVYCTRL LDYSGPEKEK AKSLLRGIRM AQTDFPSMDM EHFPL
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.