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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g061590.2.1 Tomato cytosol 43.55 59.67
CDY35917 Canola cytosol 89.52 29.88
CDY40468 Canola cytosol 89.52 29.84
VIT_11s0016g03260.t01 Wine grape cytosol 62.5 20.37
PGSC0003DMT400006585 Potato cytosol 58.47 18.93
Zm00001d042523_P001 Maize cytosol 47.18 15.58
KXG33895 Sorghum cytosol 47.18 15.52
GSMUA_Achr1P19740_001 Banana cytosol 46.37 15.29
TraesCS7A01G398600.1 Wheat cytosol 46.37 15.17
TraesCS7B01G299300.1 Wheat cytosol, mitochondrion 43.95 15.1
TraesCS7D01G392900.2 Wheat cytosol 45.97 15.04
CDY30158 Canola cytosol 42.74 14.85
CDX97740 Canola cytosol 41.13 14.31
HORVU7Hr1G093620.9 Barley cytosol 38.71 12.75
CDY70805 Canola nucleus 5.65 4.65
CDY44976 Canola cytosol 7.66 3.76
CDY58070 Canola cytosol 7.26 3.64
CDY58069 Canola nucleus 6.45 3.59
CDY36901 Canola cytosol 6.45 3.19
Os06t0622500-00 Rice cytosol 0.4 0.26
PGSC0003DMT400083452 Potato cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDY35918EnsemblPlantsGene:GSBRNA2T00059467001Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_repeat
PANTHER:PTHR12558PANTHER:PTHR12558:SF13PFAM:PF12895PFscan:PS50005PFscan:PS50293ProteinID:CDY35918
ProteinID:CDY35918.1SUPFAM:SSF48452UniParc:UPI0004EF1621UniProt:A0A078HGE9MapMan:35.1:
Description
BnaA07g00690DBnaA07g00690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGE9]
Coordinates
chrLK032363:-:330176..335122
Molecular Weight (calculated)
27535.5 Da
IEP (calculated)
6.707
GRAVY (calculated)
-0.359
Length
248 amino acids
Sequence
(BLAST)
001: MEAMLVDCVR NSLSHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCYQMDLL NEAESALSPL NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTL DPLLWAAYEE LCILGAAEEP SAVFGEAAAL SIQKQYMQQL PSSLGLNTYN DERNTTSAKN TSSEDYSPRQ
201: SKHTQGHGLK DISGNFHSHG LNGGVSNMSF YNTPSPVAAQ HRTCRLKI
Best Arabidopsis Sequence Match ( AT2G20000.1 )
(BLAST)
001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
Arabidopsis Description
CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.